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rawrr

Bioc current

Direct Access to Orbitrap Data and Beyond

v1.20.0 · software · GPL-3

Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

62 23 exported

Complexity

2.6 avg / 11 max

Call network

62 nodes / 65 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

4,506

Files

78

Compiled share

0%

Has compiled src

No

Language breakdown

R 2,201 (48.8%)Tests 322 (7.1%)Docs 1,183 (26.3%)Vignettes 800 (17.8%)

API

Exported functions

26

Internal functions

37

Recent export changes

v3.22+2 .isAssemblyWorking, .rawrrAssembly
v3.21−2 .checkDllInMonoPath, .thermofisherlsmsUrl

Testing & CI

Has tests

Yes

Test-to-code ratio

0.15

testthat edition

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

92.3%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.5

System requirements

2

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

11

First release

2021-09-14

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

0

LOC over versions

v3.13: 3,975 LOCv3.14: 4,000 LOCv3.15: 4,100 LOCv3.16: 4,126 LOCv3.17: 4,375 LOCv3.18: 4,394 LOCv3.19: 4,403 LOCv3.20: 4,472 LOCv3.21: 4,453 LOCv3.22: 4,506 LOCv3.23: 4,506 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 119 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
97%
Return-value docs
96%
References docs
14%

Topics

Depended on by (3)

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rawrr")
Panse, C., Kockmann, T., & Schwarz, L. (2026). rawrr: Direct Access to Orbitrap Data and Beyond (Version 1.20.0) [Computer software]. https://bioconductor.org/packages/rawrr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rawrr version 1.20.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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