lcmsPlot
Bioc currentComprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
lcmsPlot is an R package designed for visualising Liquid Chromatography-Mass Spectrometry (LC-MS) data with publication-ready high-quality plots. The package enables users to generate and customise chromatograms, mass traces, spectra, and more with fine-tuned aesthetics and annotation options.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
111 23 exported
Complexity
2.9 avg / 16 max
Call network
111 nodes / 82 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,184
Files
151
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
88
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.13
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-04-28
Latest release
2026-04-28
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 95 (61 internal)includes a package overview page
- Examples that run
- 97%28 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/computational-metabolomics/lcmsplot on 2026-10-18.
The R CMD check workflow runs on Linux
Topics
People
- Ossama Edbali author maintainer
- Ralf Johannes Maria Weber author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("lcmsPlot")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.