rawDiag
Bioc currentBrings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
37 16 exported
Complexity
2.3 avg / 8 max
Call network
37 nodes / 23 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,709
Files
38
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
16
Internal functions
21
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
21.4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 92%
- Return-value docs
- 100%
- References docs
- 50%
Topics
People
- Christian Panse author maintainer
- Tobias Kockmann author
- Christian Trachsel author