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HPAStainR

Bioc removed

Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes

v1.12.0 · Artistic-2.0

Release Lineage

Entered 3.12 · Oct 28, 2020

Removed after 3.18 · Oct 25, 2023

1.0 In 7 of 49 releases 3.23

Description

This package is built around the HPAStainR function. The purpose of the HPAStainR function is to query the visual staining data in the Human Protein Atlas to return a table of staining ranked cell types. The function also has multiple arguments to personalize to output as well to include cancer data, csv readable names, modify the confidence levels of the results and more. The other functions exist exclusively to easily acquire the data required to run HPAStainR.

Advisories

None published for Bioconductor

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Available on

CRANr2uBioconductorautoCRANCOPR

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HPAStainR")
Nieuwenhuis, T. O. (2023). HPAStainR: Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes (Version 1.12.0) [Computer software]. https://bioconductor.org/packages/HPAStainR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HPAStainR version 1.12.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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