gmoviz
Bioc currentSeamless visualization of complex genomic variations in GMOs and edited cell lines
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
Genetically modified organisms (GMOs) and cell lines are widely used models in all kinds of biological research. As part of characterising these models, DNA sequencing technology and bioinformatics analyses are used systematically to study their genomes. Therefore, large volumes of data are generated and various algorithms are applied to analyse this data, which introduces a challenge on representing all findings in an informative and concise manner. `gmoviz` provides users with an easy way to visualise and facilitate the explanation of complex genomic editing events on a larger, biologically-relevant scale.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
43 13 exported
Complexity
6.3 avg / 21 max
Call network
43 nodes / 64 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,261
Files
50
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
30
Testing & CI
Has tests
Yes
Test-to-code ratio
0.14
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-09-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 92%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Kathleen Zeglinski maintainer author
- Monther Alhamdoosh author
- Arthur Hsu author
- Constantinos Koutsakis author