dyngen
A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses
v1.1.1
·
Apr 1, 2026
·
MIT + file LICENSE
Description
A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.
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CRAN Check Status
3
NOTE
11
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (3 non-OK)
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘anndataR’
NOTE
r-oldrel-macos-x86_64
package dependencies
Package suggested but not available for checking: ‘anndataR’
NOTE
r-oldrel-windows-x86_64
package dependencies
Package suggested but not available for checking: 'anndataR'
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 21, 2026
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘anndataR’
NOTE
r-oldrel-macos-x86_64
package dependencies
Package suggested but not available for checking: ‘anndataR’
NOTE
r-oldrel-windows-x86_64
package dependencies
Package suggested but not available for checking: 'anndataR'
ERROR 0 OK · 5 NOTE · 0 WARNING · 9 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
ERROR
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
ERROR
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-devel-windows-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-patched-linux-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-release-linux-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-release-windows-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
ERROR
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
| ^
Dependency Network
Version History
new
1.0.5
Mar 10, 2026
new
0.4.0
Sep 9, 2020