hdacCCR_data

TPP-CCR example dataset (replicates 1 and 2)

Bundled with TPP · exported, loads via data()

Class

list

Elements

Missing

Format

rda · xz

version 2 · 47 KB

File

data/hdacCCR_smallExample.RData

Fingerprint

0ab7c299

Source

Source not stated

About this object

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure

Distinct

Nesting depth

Element length

13 – 14

Total length

Nested rows

1,014

Nested columns

Nested schema

varies between elements

Elements

Element

Type

Distinct

Missing

Summary

Panobinostat_1

list

nested·507 rows nested

Element length

507 – 507

Total length

7,098

Nested rows

507

What is inside it

Element

Type

Distinct

Missing

Summary

gene_name

character

507

3 – 79 characters

qssm

integer

0 – 359mean 12.31

Min.

1st Qu.

Median

Mean

12.3097

3rd Qu.

Max.

359

Std. dev

26.9319

Skewness

7.099

Kurtosis

70.2

Zeros

Outliers

530 low · 53 high

qupm

integer

0 – 53mean 5.75

Min.

1st Qu.

Median

Mean

5.7495

3rd Qu.

Max.

Std. dev

6.6513

Skewness

3.029

Kurtosis

13.18

Zeros

Outliers

260 low · 26 high

reference_label

character

4 characters

rel_fc_126

numeric

494

0.0947 – 11.9655mean 1.451

Min.

0.0947

1st Qu.

1.2107

Median

1.4298

Mean

1.4514

3rd Qu.

1.6124

Max.

11.9655

Std. dev

0.6834

Skewness

9.848

Kurtosis

136.3

Outliers

176 low · 11 high

rel_fc_127L

numeric

492

0.2933 – 10.6024mean 1.535

Min.

0.2933

1st Qu.

1.2684

Median

1.4951

Mean

1.5348

3rd Qu.

1.6679

Max.

10.6024

Std. dev

0.6287

Skewness

8.53

Kurtosis

109.2

Outliers

204 low · 16 high

rel_fc_127H

numeric

493

0.604 – 8.3605mean 1.256

Min.

0.604

1st Qu.

1.1059

Median

1.2128

Mean

1.2561

3rd Qu.

1.3339

Max.

8.3605

Std. dev

0.4629

Skewness

10.37

Kurtosis

140.7

Outliers

204 low · 16 high

rel_fc_128L

numeric

492

0.5465 – 7.5429mean 1.232

Min.

0.5465

1st Qu.

1.0935

Median

1.1839

Mean

1.2318

3rd Qu.

1.287

Max.

7.5429

Std. dev

0.4306

Skewness

9.977

Kurtosis

131.2

Outliers

337 low · 26 high

rel_fc_128H

numeric

493

0.3191 – 6.7808mean 1.172

Min.

0.3191

1st Qu.

1.0444

Median

1.1686

Mean

1.1718

3rd Qu.

1.2629

Max.

6.7808

Std. dev

0.377

Skewness

9.498

Kurtosis

128.5

Outliers

2113 low · 8 high

rel_fc_129L

numeric

493

0.2851 – 4.6146mean 1.248

Min.

0.2851

1st Qu.

1.1089

Median

1.2468

Mean

1.2485

3rd Qu.

1.3752

Max.

4.6146

Std. dev

0.3219

Skewness

4.611

Kurtosis

42.72

Outliers

148 low · 6 high

rel_fc_129H

numeric

494

0.4642 – 2.5027mean 0.8381

Min.

0.4642

1st Qu.

0.7837

Median

0.832

Mean

0.8381

3rd Qu.

0.8767

Max.

2.5027

Std. dev

0.1253

Skewness

5.241

Kurtosis

63.38

Outliers

2911 low · 18 high

rel_fc_130L

numeric

493

0.632 – 4.3432mean 1.329

Min.

0.632

1st Qu.

1.1912

Median

1.3133

Mean

1.3287

3rd Qu.

1.4219

Max.

4.3432

Std. dev

0.2678

Skewness

3.776

Kurtosis

35.04

Outliers

217 low · 14 high

rel_fc_130H

numeric

489

0.4854 – 2.6222mean 1.067

Min.

0.4854

1st Qu.

1.0093

Median

1.0629

Mean

1.0672

3rd Qu.

1.1124

Max.

2.6222

Std. dev

0.13

Skewness

3.705

Kurtosis

41.96

Outliers

3414 low · 20 high

rel_fc_131L

integer

Panobinostat_2

list

nested·507 rows nested

Element length

507 – 507

Total length

6,591

Nested rows

507

What is inside it

Element

Type

Distinct

Missing

Summary

gene_name

character

507

3 – 79 characters

qssm

integer

0 – 342mean 12.11

Min.

1st Qu.

Median

Mean

12.1124

3rd Qu.

Max.

342

Std. dev

25.6059

Skewness

6.918

Kurtosis

67.69

Zeros

Outliers

540 low · 54 high

qupm

integer

0 – 55mean 5.763

Min.

1st Qu.

Median

Mean

5.7633

3rd Qu.

Max.

Std. dev

6.6907

Skewness

2.935

Kurtosis

12.08

Zeros

Outliers

370 low · 37 high

rel_fc_126

numeric

493

0.3675 – 9.8245mean 1.31

Min.

0.3675

1st Qu.

1.1052

Median

1.2517

Mean

1.3102

3rd Qu.

1.4284

Max.

9.8245

Std. dev

0.5591

Skewness

9.378

Kurtosis

125.5

Outliers

196 low · 13 high

rel_fc_127L

numeric

493

0 – 9.6189mean 1.284

Min.

1st Qu.

1.103

Median

1.2414

Mean

1.2835

3rd Qu.

1.3809

Max.

9.6189

Std. dev

0.5643

Skewness

10.61

Kurtosis

144.5

Zeros

Outliers

2510 low · 15 high

rel_fc_127H

numeric

493

0 – 7.1028mean 1.031

Min.

1st Qu.

0.8644

Median

1.0138

Mean

1.0312

3rd Qu.

1.16

Max.

7.1028

Std. dev

0.4482

Skewness

6.647

Kurtosis

78.06

Zeros

Outliers

2611 low · 15 high

rel_fc_128L

numeric

492

0 – 8.6815mean 1.169

Min.

1st Qu.

1.0087

Median

1.1436

Mean

1.1685

3rd Qu.

1.2658

Max.

8.6815

Std. dev

0.5027

Skewness

9.585

Kurtosis

129.1

Zeros

Outliers

2812 low · 16 high

rel_fc_128H

numeric

493

0.252 – 6.2316mean 1.093

Min.

0.252

1st Qu.

0.966

Median

1.0806

Mean

1.0934

3rd Qu.

1.1734

Max.

6.2316

Std. dev

0.3614

Skewness

8.612

Kurtosis

109.1

Outliers

3010 low · 20 high

rel_fc_129L

numeric

493

0.4506 – 4.5214mean 1.214

Min.

0.4506

1st Qu.

1.0977

Median

1.1941

Mean

1.2139

3rd Qu.

1.2911

Max.

4.5214

Std. dev

0.2891

Skewness

5.114

Kurtosis

51.21

Outliers

3411 low · 23 high

rel_fc_129H

numeric

494

0.2327 – 2.044mean 0.9656

Min.

0.2327

1st Qu.

0.8458

Median

0.9485

Mean

0.9656

3rd Qu.

1.0667

Max.

2.044

Std. dev

0.2157

Skewness

0.6547

Kurtosis

3.141

Outliers

2510 low · 15 high

rel_fc_130L

numeric

493

0 – 3.6384mean 1.139

Min.

1st Qu.

1.0316

Median

1.1361

Mean

1.1391

3rd Qu.

1.2556

Max.

3.6384

Std. dev

0.2372

Skewness

2.254

Kurtosis

25.81

Zeros

Outliers

2513 low · 12 high

rel_fc_130H

numeric

489

0.2458 – 2.6334mean 1.129

Min.

0.2458

1st Qu.

1.0113

Median

1.1334

Mean

1.1292

3rd Qu.

1.2355

Max.

2.6334

Std. dev

0.2301

Skewness

0.7784

Kurtosis

6.268

Outliers

2715 low · 12 high

rel_fc_131L

integer

The nested tables do not share one set of columns, so there is no single schema to show.

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-09-12	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.22	2025-10-29	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.21	2025-04-15	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.20	2024-10-29	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.19	2024-04-30	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.18	2023-10-24	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.17	2023-04-25	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.16	2023-02-09	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.15	2022-04-26	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.14	2021-11-03	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.13	2021-07-27	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.12	2020-10-27	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.11	2020-10-06	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.10	2020-01-31	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.9	2019-05-02	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.8	2019-01-04	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.7	2018-10-07	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.6	2017-10-30	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.5	2017-07-06	2 elements	Unchanged	rda · xz version 2 · 47 KB	exact
3.4	2016-12-07	2 elements	Repackaged	rda · xz version 2 · 47 KB	exact
3.3	2016-10-07	2 elements	Unchanged	rda · gzip version 2 · 62 KB	exact
3.2	2016-04-17	2 elements	–	rda · gzip version 2 · 62 KB	exact