hdacTR_data
TPP-TR example dataset.
Bundled with TPP · exported, loads via data()
Class
list
Elements
4
Missing
0
Format
rda · xz
version 2 · 112 KB
File
data/hdacTR_smallExample.RData
Fingerprint
fe07c5d7
Source
Source not stated
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
4
Nesting depth
2
Element length
13 – 13
Total length
52
Nested rows
2,034
Nested columns
13
Elements
Element
Type
Distinct
Missing
Summary
Vehicle_1list130nested·508 rows nested
Element length
508 – 508
Total length
6,604
Nested rows
508
What is inside it
Element
Type
Distinct
Missing
Summary
gene_name
character
508
0
3 – 20 characters
qssminteger5400 – 125mean 9.811
Min.
0
1st Qu.
2
Median
5
Mean
9.811
3rd Qu.
10
Max.
125
Std. dev
14.7979
Skewness
3.941
Kurtosis
19.74
Zeros
4
Outliers
510 low · 51 high
qupminteger3000 – 57mean 5.284
Min.
0
1st Qu.
2
Median
3
Mean
5.2835
3rd Qu.
6
Max.
57
Std. dev
6.0922
Skewness
3.875
Kurtosis
22.26
Zeros
4
Outliers
450 low · 45 high
rel_fc_126numeric44540 – 4.7914mean 0.0923
Min.
0
1st Qu.
0.0063
Median
0.0151
Mean
0.0923
3rd Qu.
0.0436
Max.
4.7914
Std. dev
0.3308
Skewness
9.091
Kurtosis
103.4
Zeros
60
Outliers
770 low · 77 high
rel_fc_127Lnumeric47740 – 6.9103mean 0.1581
Min.
0
1st Qu.
0.0219
Median
0.0405
Mean
0.1581
3rd Qu.
0.1199
Max.
6.9103
Std. dev
0.4486
Skewness
9.469
Kurtosis
118.8
Zeros
28
Outliers
720 low · 72 high
rel_fc_127Hnumeric49140 – 7.7476mean 0.2211
Min.
0
1st Qu.
0.0399
Median
0.0785
Mean
0.2211
3rd Qu.
0.2495
Max.
7.7476
Std. dev
0.4895
Skewness
9.721
Kurtosis
127.9
Zeros
14
Outliers
520 low · 52 high
rel_fc_128Lnumeric49840 – 7.023mean 0.2932
Min.
0
1st Qu.
0.0555
Median
0.1147
Mean
0.2932
3rd Qu.
0.4169
Max.
7.023
Std. dev
0.5026
Skewness
7.496
Kurtosis
82.49
Zeros
7
Outliers
190 low · 19 high
rel_fc_128Hnumeric49840 – 6.0556mean 0.4419
Min.
0
1st Qu.
0.1105
Median
0.2552
Mean
0.4419
3rd Qu.
0.677
Max.
6.0556
Std. dev
0.5467
Skewness
5.41
Kurtosis
46.98
Zeros
6
Outliers
70 low · 7 high
rel_fc_129Lnumeric50240 – 4.3048mean 0.6062
Min.
0
1st Qu.
0.2453
Median
0.5852
Mean
0.6062
3rd Qu.
0.8727
Max.
4.3048
Std. dev
0.4626
Skewness
2.366
Kurtosis
13.7
Zeros
3
Outliers
60 low · 6 high
rel_fc_129Hnumeric50340 – 3.191mean 0.763
Min.
0
1st Qu.
0.5678
Median
0.7914
Mean
0.763
3rd Qu.
0.9525
Max.
3.191
Std. dev
0.3344
Skewness
1.071
Kurtosis
8.158
Zeros
2
Outliers
50 low · 5 high
rel_fc_130Lnumeric50440.1476 – 1.8574mean 0.8815
Min.
0.1476
1st Qu.
0.8059
Median
0.902
Mean
0.8815
3rd Qu.
0.9762
Max.
1.8574
Std. dev
0.1829
Skewness
-0.3505
Kurtosis
3.428
Outliers
3625 low · 11 high
rel_fc_130Hnumeric50140.5677 – 1.5072mean 0.9687
Min.
0.5677
1st Qu.
0.893
Median
0.9576
Mean
0.9687
3rd Qu.
1.0233
Max.
1.5072
Std. dev
0.133
Skewness
0.8043
Kurtosis
2.52
Outliers
3110 low · 21 high
rel_fc_131L
integer
1
4
1
Vehicle_2list130nested·509 rows nested
Element length
509 – 509
Total length
6,617
Nested rows
509
What is inside it
Element
Type
Distinct
Missing
Summary
gene_name
character
509
0
3 – 20 characters
qssminteger6100 – 164mean 12.39
Min.
0
1st Qu.
3
Median
7
Mean
12.387
3rd Qu.
14
Max.
164
Std. dev
18.8007
Skewness
4.218
Kurtosis
22.92
Zeros
5
Outliers
390 low · 39 high
qupminteger3400 – 67mean 6.277
Min.
0
1st Qu.
2
Median
4
Mean
6.277
3rd Qu.
8
Max.
67
Std. dev
7.134
Skewness
3.838
Kurtosis
21.59
Zeros
5
Outliers
260 low · 26 high
rel_fc_126numeric48950 – 4.7544mean 0.1273
Min.
0
1st Qu.
0.0173
Median
0.0328
Mean
0.1273
3rd Qu.
0.0737
Max.
4.7544
Std. dev
0.3742
Skewness
7.995
Kurtosis
78.4
Zeros
16
Outliers
790 low · 79 high
rel_fc_127Lnumeric49450 – 5.4406mean 0.1898
Min.
0
1st Qu.
0.0351
Median
0.0593
Mean
0.1898
3rd Qu.
0.1482
Max.
5.4406
Std. dev
0.4367
Skewness
7.281
Kurtosis
69.58
Zeros
11
Outliers
820 low · 82 high
rel_fc_127Hnumeric49750 – 4.8537mean 0.2127
Min.
0
1st Qu.
0.0489
Median
0.0843
Mean
0.2127
3rd Qu.
0.2629
Max.
4.8537
Std. dev
0.3729
Skewness
6.948
Kurtosis
69.78
Zeros
8
Outliers
460 low · 46 high
rel_fc_128Lnumeric50150 – 6.9853mean 0.3355
Min.
0
1st Qu.
0.0676
Median
0.1309
Mean
0.3355
3rd Qu.
0.5126
Max.
6.9853
Std. dev
0.5058
Skewness
6.587
Kurtosis
71.74
Zeros
4
Outliers
100 low · 10 high
rel_fc_128Hnumeric50350 – 7.0698mean 0.3991
Min.
0
1st Qu.
0.0907
Median
0.2386
Mean
0.3991
3rd Qu.
0.617
Max.
7.0698
Std. dev
0.5028
Skewness
6.244
Kurtosis
68.25
Zeros
2
Outliers
80 low · 8 high
rel_fc_129Lnumeric50450 – 3.7811mean 0.5767
Min.
0
1st Qu.
0.2192
Median
0.5399
Mean
0.5767
3rd Qu.
0.8437
Max.
3.7811
Std. dev
0.4332
Skewness
2.066
Kurtosis
10.89
Zeros
1
Outliers
50 low · 5 high
rel_fc_129Hnumeric50450.0574 – 2.7847mean 0.8158
Min.
0.0574
1st Qu.
0.6286
Median
0.8585
Mean
0.8158
3rd Qu.
0.9991
Max.
2.7847
Std. dev
0.3122
Skewness
0.3438
Kurtosis
3.269
Outliers
92 low · 7 high
rel_fc_130Lnumeric50050 – 1.8562mean 0.9163
Min.
0
1st Qu.
0.8525
Median
0.9484
Mean
0.9163
3rd Qu.
1.0183
Max.
1.8562
Std. dev
0.1774
Skewness
-1.234
Kurtosis
5.3
Zeros
1
Outliers
3128 low · 3 high
rel_fc_130Hnumeric50450.1123 – 1.2291mean 0.8186
Min.
0.1123
1st Qu.
0.7651
Median
0.8102
Mean
0.8186
3rd Qu.
0.8557
Max.
1.2291
Std. dev
0.1056
Skewness
-0.1026
Kurtosis
6.158
Outliers
4411 low · 33 high
rel_fc_131L
integer
1
5
1
Panobinostat_1list130nested·508 rows nested
Element length
508 – 508
Total length
6,604
Nested rows
508
What is inside it
Element
Type
Distinct
Missing
Summary
gene_name
character
508
0
3 – 20 characters
qssminteger5600 – 141mean 10.31
Min.
0
1st Qu.
2.75
Median
5
Mean
10.315
3rd Qu.
11
Max.
141
Std. dev
15.8273
Skewness
4.115
Kurtosis
21.43
Zeros
3
Outliers
500 low · 50 high
qupminteger3200 – 64mean 5.553
Min.
0
1st Qu.
2
Median
3
Mean
5.5531
3rd Qu.
7
Max.
64
Std. dev
6.5554
Skewness
4.105
Kurtosis
24.92
Zeros
3
Outliers
350 low · 35 high
rel_fc_126numeric46140 – 12.0188mean 0.1335
Min.
0
1st Qu.
0.0089
Median
0.0196
Mean
0.1335
3rd Qu.
0.0559
Max.
12.0188
Std. dev
0.647
Skewness
14.14
Kurtosis
237.3
Zeros
44
Outliers
770 low · 77 high
rel_fc_127Lnumeric48040 – 10.2199mean 0.1696
Min.
0
1st Qu.
0.0184
Median
0.0381
Mean
0.1696
3rd Qu.
0.1256
Max.
10.2199
Std. dev
0.5914
Skewness
12.31
Kurtosis
185
Zeros
25
Outliers
720 low · 72 high
rel_fc_127Hnumeric49540 – 11.2907mean 0.1997
Min.
0
1st Qu.
0.0318
Median
0.0643
Mean
0.1997
3rd Qu.
0.2121
Max.
11.2907
Std. dev
0.5872
Skewness
14.49
Kurtosis
257.1
Zeros
10
Outliers
610 low · 61 high
rel_fc_128Lnumeric49840 – 11.7271mean 0.3095
Min.
0
1st Qu.
0.0557
Median
0.1161
Mean
0.3095
3rd Qu.
0.4237
Max.
11.7271
Std. dev
0.6604
Skewness
11.75
Kurtosis
184.5
Zeros
7
Outliers
180 low · 18 high
rel_fc_128Hnumeric49840 – 15.805mean 0.4337
Min.
0
1st Qu.
0.1016
Median
0.2374
Mean
0.4337
3rd Qu.
0.6539
Max.
15.805
Std. dev
0.8195
Skewness
13.7
Kurtosis
245.5
Zeros
6
Outliers
80 low · 8 high
rel_fc_129Lnumeric50340 – 8.3724mean 0.5318
Min.
0
1st Qu.
0.191
Median
0.4777
Mean
0.5318
3rd Qu.
0.7634
Max.
8.3724
Std. dev
0.5213
Skewness
7.433
Kurtosis
101.7
Zeros
1
Outliers
90 low · 9 high
rel_fc_129Hnumeric50340.0562 – 3.8836mean 0.774
Min.
0.0562
1st Qu.
0.572
Median
0.8083
Mean
0.774
3rd Qu.
0.9506
Max.
3.8836
Std. dev
0.3449
Skewness
1.889
Kurtosis
14.72
Outliers
110 low · 11 high
rel_fc_130Lnumeric50340.1232 – 2.0245mean 0.8978
Min.
0.1232
1st Qu.
0.818
Median
0.9256
Mean
0.8978
3rd Qu.
1.0027
Max.
2.0245
Std. dev
0.1948
Skewness
0.1223
Kurtosis
6.674
Outliers
3022 low · 8 high
rel_fc_130Hnumeric50040.2476 – 2.0637mean 1.025
Min.
0.2476
1st Qu.
0.953
Median
1.0169
Mean
1.0254
3rd Qu.
1.0758
Max.
2.0637
Std. dev
0.1677
Skewness
1.022
Kurtosis
8.509
Outliers
4715 low · 32 high
rel_fc_131L
integer
1
4
1
Panobinostat_2list130nested·509 rows nested
Element length
509 – 509
Total length
6,617
Nested rows
509
What is inside it
Element
Type
Distinct
Missing
Summary
gene_name
character
509
0
3 – 20 characters
qssminteger6300 – 183mean 12.66
Min.
0
1st Qu.
3
Median
7
Mean
12.6601
3rd Qu.
13
Max.
183
Std. dev
19.8463
Skewness
4.395
Kurtosis
25.08
Zeros
10
Outliers
480 low · 48 high
qupminteger3700 – 69mean 6.356
Min.
0
1st Qu.
2
Median
4
Mean
6.3556
3rd Qu.
8
Max.
69
Std. dev
7.2721
Skewness
3.846
Kurtosis
21.41
Zeros
10
Outliers
280 low · 28 high
rel_fc_126numeric490100 – 6.0934mean 0.1392
Min.
0
1st Qu.
0.0237
Median
0.038
Mean
0.1392
3rd Qu.
0.0751
Max.
6.0934
Std. dev
0.4051
Skewness
9.001
Kurtosis
108.1
Zeros
9
Outliers
740 low · 74 high
rel_fc_127Lnumeric492100 – 4.8579mean 0.1705
Min.
0
1st Qu.
0.0368
Median
0.0604
Mean
0.1705
3rd Qu.
0.1396
Max.
4.8579
Std. dev
0.3633
Skewness
7.165
Kurtosis
71.4
Zeros
8
Outliers
740 low · 74 high
rel_fc_127Hnumeric498100 – 6.9257mean 0.2706
Min.
0
1st Qu.
0.0589
Median
0.1022
Mean
0.2706
3rd Qu.
0.3273
Max.
6.9257
Std. dev
0.4622
Skewness
7.413
Kurtosis
90.26
Zeros
2
Outliers
510 low · 51 high
rel_fc_128Lnumeric499100 – 8.4144mean 0.3826
Min.
0
1st Qu.
0.0784
Median
0.1446
Mean
0.3826
3rd Qu.
0.603
Max.
8.4144
Std. dev
0.5647
Skewness
6.714
Kurtosis
82.52
Zeros
1
Outliers
150 low · 15 high
rel_fc_128Hnumeric499100 – 9.0872mean 0.4863
Min.
0
1st Qu.
0.1264
Median
0.3
Mean
0.4863
3rd Qu.
0.7749
Max.
9.0872
Std. dev
0.58
Skewness
7.218
Kurtosis
96.65
Zeros
1
Outliers
60 low · 6 high
rel_fc_129Lnumeric499100.0146 – 5.2135mean 0.6639
Min.
0.0146
1st Qu.
0.2756
Median
0.6521
Mean
0.6639
3rd Qu.
0.9631
Max.
5.2135
Std. dev
0.4929
Skewness
2.456
Kurtosis
16.54
Outliers
70 low · 7 high
rel_fc_129Hnumeric498100.0229 – 2.6468mean 0.8239
Min.
0.0229
1st Qu.
0.6318
Median
0.8491
Mean
0.8239
3rd Qu.
1.0272
Max.
2.6468
Std. dev
0.3174
Skewness
0.2083
Kurtosis
2.112
Outliers
61 low · 5 high
rel_fc_130Lnumeric499100.1434 – 1.9569mean 1.089
Min.
0.1434
1st Qu.
1.0052
Median
1.1122
Mean
1.089
3rd Qu.
1.1971
Max.
1.9569
Std. dev
0.2049
Skewness
-0.9046
Kurtosis
3.682
Outliers
3523 low · 12 high
rel_fc_130Hnumeric497100.6064 – 1.8793mean 1.088
Min.
0.6064
1st Qu.
1.0299
Median
1.0838
Mean
1.0878
3rd Qu.
1.1475
Max.
1.8793
Std. dev
0.1235
Skewness
0.5586
Kurtosis
5.828
Outliers
3015 low · 15 high
rel_fc_131L
integer
1
10
1
Every nested table has these 13 columns
- gene_name
- qssm
- qupm
- rel_fc_126
- rel_fc_127L
- rel_fc_127H
- rel_fc_128L
- rel_fc_128H
- rel_fc_129L
- rel_fc_129H
- rel_fc_130L
- rel_fc_130H
- rel_fc_131L
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-09-12 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.22 | 2025-10-29 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.21 | 2025-04-15 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.20 | 2024-10-29 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.19 | 2024-04-30 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.18 | 2023-10-24 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.17 | 2023-04-25 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.16 | 2023-02-09 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.15 | 2022-04-26 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.14 | 2021-11-03 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.13 | 2021-07-27 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.12 | 2020-10-27 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.11 | 2020-10-06 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.10 | 2020-01-31 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.9 | 2019-05-02 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.8 | 2019-01-04 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.7 | 2018-10-07 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.6 | 2017-10-30 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.5 | 2017-07-06 | 4 elements | Unchanged | rda · xz version 2 · 112 KB | exact |
| 3.4 | 2016-12-07 | 4 elements | Repackaged | rda · xz version 2 · 112 KB | exact |
| 3.3 | 2016-10-07 | 4 elements | Unchanged | rda · gzip version 2 · 146 KB | exact |
| 3.2 | 2016-04-17 | 4 elements | Repackaged | rda · gzip version 2 · 146 KB | exact |
| 3.1 | 2015-07-21 | 4 elements | – | rda · xz version 2 · 112 KB | exact |