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standR

Bioc current

Spatial transcriptome analyses of Nanostring's DSP data in R

v1.16.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. standR allows data inspection, quality control, normalization, batch correction and evaluation with informative visualizations.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Spatial
Software › ResearchField › Transcriptomics
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Normalization
Software › Technology › ExperimentHubSoftware

Depended on by (1)

Bioconductor (1)

shinyDSP

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