RTCGA.clinical
Bioc currentClinical datasets from The Cancer Genome Atlas Project
Release Lineage
Entered 3.2 · Oct 14, 2015
Current · Requires R 4.6
Description
Package provides clinical datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Clinical data format is explained here https://wiki.nci.nih.gov/display/TCGA/Clinical+Data+Overview. Data from 2015-11-01 snapshot.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 0 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
532
Files
49
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
1
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.2.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
22
First release
2015-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
Depended on by (2)
Bioconductor (2)
People
Marcin Kosinski