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RTCGA.PANCAN12

Bioc current

PanCan 12 from Genome Cancer Browser

v1.40.0 · experiment · GPL-2

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Package provides clinical, expression, cnv and mutation data from Genome Cancer Browser.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

1 0 exported

Complexity

1 avg / 1 max

Call network

1 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

243

Files

18

Compiled share

0%

Has compiled src

No

Language breakdown

R 44 (18.1%)Docs 38 (15.6%)Vignettes 161 (66.3%)

API

Exported functions

0

Internal functions

1

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.3.0

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

21

First release

2016-05-15

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.3: 242 LOCv3.4: 242 LOCv3.5: 242 LOCv3.6: 242 LOCv3.7: 242 LOCv3.8: 243 LOCv3.9: 243 LOCv3.10: 243 LOCv3.11: 243 LOCv3.12: 243 LOCv3.13: 243 LOCv3.14: 243 LOCv3.15: 243 LOCv3.16: 243 LOCv3.17: 243 LOCv3.18: 243 LOCv3.19: 243 LOCv3.20: 243 LOCv3.21: 243 LOCv3.22: 243 LOCv3.23: 243 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Depended on by (1)

Bioconductor (1)

People

Marcin Kosinski

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RTCGA.PANCAN12")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RTCGA.PANCAN12 version 1.40.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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