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QDNAseq

Bioc current

Quantitative DNA Sequencing for Chromosomal Aberrations

v1.48.0 · software · GPL
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Release Lineage

Entered 2.14 · Apr 14, 2014

Current · Requires R 4.6

1.0 In 25 of 49 releases 3.23

Description

Quantitative DNA sequencing for chromosomal aberrations. The genome is divided into non-overlapping fixed-sized bins, number of sequence reads in each counted, adjusted with a simultaneous two-dimensional loess correction for sequence mappability and GC content, and filtered to remove spurious regions in the genome. Downstream steps of segmentation and calling are also implemented via packages DNAcopy and CGHcall, respectively.

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Topics

Software › AssayDomain › CopyNumberVariation
Software › Technology › Sequencing › DNASeq
Software › ResearchField › Genetics
Software › BiologicalQuestion › GenomeAnnotation
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › QualityControl
Software › Technology › Sequencing

Depended on by (6)

Bioconductor (6)

ACE biscuiteer cfdnakit GeneBreak QDNAseq.hg19 QDNAseq.mm10

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