ACE
Bioc currentAbsolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Release Lineage
Entered 3.8 · Oct 31, 2018
Current · Requires R 4.6
Description
Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
21 20 exported
Complexity
18.8 avg / 71 max
Call network
21 nodes / 21 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,828
Files
29
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
1
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
16
First release
2018-10-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 20includes a package overview page
- Examples that run
- 89%16 run in a plain check · 2 never run
- Exported functions with examples
- 94%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- ACE vignette HTML
Repository practices
Checks run against github.com/tgac-vumc/ace on 2026-10-11.
No development-tooling practices detected in the upstream repository.
Datasets
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("ACE")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/bty1055.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.