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Topic: SingleCell

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Release: Release 3.8 (2018)

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67 packages on Bioconductor, most distinct IPs first

SingleCell in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
SingleCellExperiment
S4 Classes for Single Cell DataDavide Risso		Davide Rissosoftware28 Apr 202624,48325
HDF5Array
HDF5 datasets as array-like objects in RHervé Pagès		Hervé Pagèssoftware28 Apr 202620,53728
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
slingshot
Tools for ordering single-cell sequencingKelly Street		Kelly Streetsoftware28 Apr 20264,68438
AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Gert Hulselmans		Gert Hulselmanssoftware29 Apr 20264,610115
DropletUtils
Utilities for Handling Single-Cell Droplet DataJonathan Griffiths		Jonathan Griffithssoftware27 Sep 20264,10759
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
chromVAR
Chromatin Variation Across RegionsAlicia Schep		Alicia Schepsoftware11 May 20262,255134
zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq DataDavide Risso		Davide Rissosoftware28 Apr 20261,56974
splatter
Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia		Luke Zappiasoftware28 Apr 20261,55361
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
CATALYST
Cytometry dATa anALYSis ToolsHelena L. Crowell		Helena L. Crowellsoftware28 Apr 20261,265176
iSEE
Interactive SummarizedExperiment ExplorerKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 20261,237109
singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq DataJoshua David Campbell		Joshua David Campbellsoftware29 Apr 20261,218392
BASiCS
Bayesian Analysis of Single-Cell Sequencing dataCatalina Vallejos		Catalina Vallejossoftware29 Apr 20261,206129
diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clusteringLukas M. Weber		Lukas M. Webersoftware16 Jul 20261,152146
clusterExperiment
Compare Clusterings for Single-Cell SequencingElizabeth Purdom		Elizabeth Purdomsoftware28 Apr 20261,150147
LoomExperiment
LoomExperiment containerBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,11043
Linnorm
Linear model and normality based normalization and transformation method (Linnorm)Shun Hang Yip		Shun Hang Yipsoftware28 Apr 20261,08862
cicero
Predict cis-co-accessibility from single-cell chromatin accessibility dataHannah Pliner		Hannah Plinersoftware28 Apr 20261,077179
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Luca De Sano		Luca De Sanosoftware28 Apr 20261,01014
countsimQC
Compare Characteristic Features of Count Data SetsCharlotte Soneson		Charlotte Sonesonsoftware28 Apr 2026990125
scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributionsKeegan Korthauer		Keegan Korthauersoftware28 Apr 2026978117
SCnorm
Normalization of single cell RNA-seq dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202697167