Packages

313 packages on Bioconductor tagged Homo_sapiens or SNP, most distinct IPs first

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
GenomicAlignments Representation and manipulation of short genomic alignmentsHervé Pagès	Hervé Pagès	software	28 Apr 2026	27,006	41
BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès	Hervé Pagès	software	28 Apr 2026	14,375	57
VariantAnnotation Annotation of Genetic VariantsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	9,664	76
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
siggenes Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender	Holger Schwender	software	28 Apr 2026	4,901	17
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho	Benilton Carvalho	software	28 Apr 2026	4,087	52
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
snpStats SnpMatrix and XSnpMatrix classes and methodsDavid Clayton	David Clayton	software	28 Apr 2026	3,488	12
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
systemPipeR systemPipeR: A Multipurpose Workflow Management System for Reproducible Data AnalysisThomas Girke	Thomas Girke	software	28 Apr 2026	2,506	94
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,773	144
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,677	144
GWASTools Tools for Genome Wide Association StudiesStephanie M. Gogarten	Stephanie M. Gogarten	software	28 Apr 2026	1,634	94
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
crlmm Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arraysBenilton S Carvalho	Benilton S Carvalho	software	28 Apr 2026	1,504	65
qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo	Robert Castelo	software	28 Apr 2026	1,495	81
FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr.	Tim Triche, Jr.	annotation	no date on record	1,483	77
sangerseqR Tools for Sanger Sequencing Data in RJonathon Hill	Jonathon Hill	software	28 Apr 2026	1,452	49
IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,449	144
GENESIS GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatednessStephanie M. Gogarten	Stephanie M. Gogarten	software	28 Apr 2026	1,444	117
SeqVarTools Tools for variant dataStephanie M. Gogarten	Stephanie M. Gogarten	software	12 Jul 2026	1,420	89
GeneRegionScan GeneRegionScanLasse Folkersen	Lasse Folkersen	software	28 Apr 2026	1,389	18