sangerseqR
Bioc currentTools for Sanger Sequencing Data in R
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
18 4 exported
Complexity
2.5 avg / 19 max
Call network
18 nodes / 16 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,729
Files
48
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
22
Internal functions
14
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
25
First release
2014-04-11
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 12includes a package overview page
- Examples that run
- 91%10 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 78%
- Help pages citing references
- 17%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Depended on by (2)
Bioconductor (2)
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("sangerseqR")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1002/dvdy.24183.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.