Packages

359 packages on Bioconductor tagged Homo_sapiens or GraphAndNetwork, most distinct IPs first

Homo_sapiens and GraphAndNetwork in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
graph graph: A package to handle graph data structuresBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	25,655	7
GSEABase Gene set enrichment data structures and methodsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	13,344	46
Rgraphviz Provides plotting capabilities for R graph objectsKasper Daniel Hansen	Kasper Daniel Hansen	software	28 Apr 2026	11,263	10
RBGL An interface to the BOOST graph libraryBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	10,698	9
graphite GRAPH Interaction from pathway Topological EnvironmentGabriele Sales	Gabriele Sales	software	28 Apr 2026	7,012	48
KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang	Jitao David Zhang	software	28 Apr 2026	6,807	14
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
pathview a tool set for pathway based data integration and visualizationWeijun Luo	Weijun Luo	software	28 Apr 2026	5,706	50
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	2,437	63
GENIE3 GEne Network Inference with Ensemble of treesVan Anh Huynh-Thu	Van Anh Huynh-Thu	software	28 Apr 2026	2,253	26
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
SPIA Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca	Adi Laurentiu Tarca	software	28 Apr 2026	1,839	15
RCy3 Functions to Access and Control CytoscapeJing Chen	Jing Chen	software	28 Apr 2026	1,822	49
IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,773	144
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,677	144
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
minet Mutual Information NETworksPatrick E. Meyer	Patrick E. Meyer	software	28 Apr 2026	1,543	1
qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo	Robert Castelo	software	28 Apr 2026	1,495	81
FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr.	Tim Triche, Jr.	annotation	no date on record	1,483	77
IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,449	144
EnrichmentBrowser Seamless navigation through combined results of set-based and network-based enrichment analysisLudwig Geistlinger	Ludwig Geistlinger	software	28 Apr 2026	1,432	92
RedeR Interactive visualization and manipulation of nested networksMauro Castro	Mauro Castro	software	14 Jul 2026	1,317	23