Packages

1,115 packages on Bioconductor tagged AnnotationData or Normalization, most distinct IPs first

AnnotationData and Normalization in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
DESeq2 Differential gene expression analysis based on the negative binomial distributionMichael Love	Michael Love	software	28 Apr 2026	32,072	54
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
assorthead Assorted Header-Only C++ LibrariesAaron Lun	Aaron Lun	software	8 Oct 2026	19,436	0
scuttle Legacy Utilities for Single-Cell RNA-Seq AnalysisAaron Lun	Aaron Lun	software	28 Apr 2026	14,236	39
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
scater Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan	Alan O'Callaghan	software	2 Jul 2026	12,635	78
ensembldb Utilities to create and use Ensembl-based annotation databasesJohannes Rainer	Johannes Rainer	software	25 May 2026	11,000	80
sva Surrogate Variable AnalysisJeffrey T. Leek	Jeffrey T. Leek	software	5 May 2026	10,804	68
scran Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun	Aaron Lun	software	28 Apr 2026	10,139	62
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
batchelor Single-Cell Batch Correction MethodsAaron Lun	Aaron Lun	software	28 Apr 2026	5,720	56
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
AUCell AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Gert Hulselmans	Gert Hulselmans	software	29 Apr 2026	4,610	115
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	software	28 Apr 2026	4,041	143
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
variancePartition Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman	Gabriel E. Hoffman	software	28 Apr 2026	3,211	99
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
scrapper Bindings to C++ Libraries for Single-Cell AnalysisAaron Lun	Aaron Lun	software	19 May 2026	3,119	30
ANCOMBC Microbiome differential abudance and correlation analyses with bias correctionHuang Lin	Huang Lin	software	28 Apr 2026	3,000	130
interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects			no date on record	2,988
metagenomeSeq Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson	Joseph N. Paulson	software	28 Apr 2026	2,924	32
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144