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Topic: SingleCell or GeneRegulation or ExperimentData

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Release: Release 2.9 (2011)

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40 packages on Bioconductor tagged SingleCell or GeneRegulation or ExperimentData, most distinct IPs first

SingleCell, GeneRegulation and ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
qpgraph
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo		Robert Castelosoftware28 Apr 20261,49581
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,25630
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,2520
BCRANK
Predicting binding site consensus from ranked DNA sequencesAdam Ameur		Adam Ameursoftware28 Apr 20261,13815
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 20261,01350
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202681611
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202666831
RforProteomics
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto		Laurent Gattoexperiment5 May 2026566144
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026558144
hapmapsnp6
Sample data - Hapmap SNP 6.0 AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20264480
ELMER.data
Data for the ELMER packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 202639011
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202638476
oligoData
Dataset samples for the oligo packageBenilton Carvalho		Benilton Carvalhoannotationno date on record37253
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202633867
HD2013SGI
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotypingMike Smith		Mike Smithexperiment5 May 202631987
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202631953
ConnectivityMap
Functional connections between drugs, genes and diseases as revealed by common gene-expression changesPaul Shannon		Paul Shannonexperiment5 May 20262810
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262690
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202626877
FlowSorted.DLPFC.450k
Illumina HumanMethylation data on sorted frontal cortex cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026258144
ChIPXpressData
ChIPXpress Pre-built DatabasesGeorge Wu		George Wuexperiment5 May 20262527
MMDiffBamSubset
Example ChIP-Seq data for the MMDiff packageGabriele Schweikert		Gabriele Schweikertexperiment5 May 20262500
msPurityData
Data to test the msPurity packageThomas N. Lawson		Thomas N. Lawsonexperiment5 May 20262440
FlowSorted.CordBloodNorway.450k
Illumina HumanMethylation data on sorted cord blood cell populationskristina gervin		kristina gervinexperiment5 May 2026243144
Single.mTEC.Transcriptomes
Single Cell Transcriptome Data and Analysis of Mouse mTEC cellsAlejandro Reyes		Alejandro Reyesexperiment5 May 20262390