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Topic: Spatial or ExpressionData or GeneSetEnrichment

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Release: Release 2.7 (2010)

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19 packages on Bioconductor tagged Spatial or ExpressionData or GeneSetEnrichment, most distinct IPs first

Spatial, ExpressionData and GeneSetEnrichment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
GSEABase
Gene set enrichment data structures and methodsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202613,34446
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
Category
Category AnalysisBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,35557
gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo		Weijun Luosoftware28 Apr 20261,92944
safe
Significance Analysis of Function and ExpressionLudwig Geistlinger		Ludwig Geistlingersoftware3 May 20261,59543
attract
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor LandscapeSamuel Zimmerman		Samuel Zimmermansoftware28 Apr 20261,23769
goProfiles
goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez		Alex Sanchezsoftware28 Apr 20261,06547
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
SAGx
Statistical Analysis of the GeneChip		no date on record447
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262690
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202626877
domainsignatures
Geneset enrichment based on InterPro domain signatures		no date on record238
ccdata
Data for Combination Connectivity Mapping (ccmap) PackageAlex Pickering		Alex Pickeringexperiment5 May 20262330