Packages

265 packages on Bioconductor tagged Homo_sapiens or Pathways or GeneRegulation, most distinct IPs first

Homo_sapiens, Pathways and GeneRegulation in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
GOSemSim GO-terms Semantic Similarity MeasuresGuangchuang Yu	Guangchuang Yu	software	30 Jun 2026	27,495	48
annotate Annotation for microarraysBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	22,557	44
GSEABase Gene set enrichment data structures and methodsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	13,344	46
KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang	Jitao David Zhang	software	28 Apr 2026	6,807	14
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
topGO Enrichment Analysis for Gene OntologyFederico Marini	Federico Marini	software	28 Apr 2026	3,228	48
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman	Jelle Goeman	software	28 Apr 2026	2,842	50
GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	2,437	63
Category Category AnalysisBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	2,355	57
GlobalAncova Global test for groups of variables via model comparisonsManuela Hummel	Manuela Hummel	software	28 Apr 2026	2,062	70
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,773	144
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,677	144
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
safe Significance Analysis of Function and ExpressionLudwig Geistlinger	Ludwig Geistlinger	software	3 May 2026	1,595	43
qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo	Robert Castelo	software	28 Apr 2026	1,495	81
FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr.	Tim Triche, Jr.	annotation	no date on record	1,483	77
IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,449	144
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
illuminaHumanv4.db Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning	Mark Dunning	annotation	no date on record	1,274	43
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,217	42