Packages

998 packages on Bioconductor tagged AnnotationData or Preprocessing, most distinct IPs first

AnnotationData and Preprocessing in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
sva Surrogate Variable AnalysisJeffrey T. Leek	Jeffrey T. Leek	software	5 May 2026	10,804	68
affy Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear	Robert D. Shear	software	28 Apr 2026	10,556	11
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
vsn Variance stabilization and calibration for microarray dataWolfgang Huber	Wolfgang Huber	software	28 Apr 2026	7,536	33
biovizBase Basic graphic utilities for visualization of genomic data.Michael Lawrence	Michael Lawrence	software	28 Apr 2026	6,487	126
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho	Benilton Carvalho	software	28 Apr 2026	4,087	52
minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	software	28 Apr 2026	4,041	143
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
marray Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang	Yee Hwa (Jean) Yang	software	28 Apr 2026	3,311	7
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
methylumi Handle Illumina methylation dataSean Davis	Sean Davis	software	16 Aug 2026	2,825	158
flowWorkspace Infrastructure for representing and interacting with gated and ungated cytometry data sets.Greg Finak	Greg Finak	software	28 Apr 2026	2,804	61
EDASeq Exploratory Data Analysis and Normalization for RNA-SeqDavide Risso	Davide Risso	software	28 Apr 2026	2,602	111
aroma.light Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson	Henrik Bengtsson	software	28 Apr 2026	2,481	8
lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang	Lei Huang	software	28 Apr 2026	2,454	165
affyPLM Methods for fitting probe-level modelsBen Bolstad	Ben Bolstad	software	28 Apr 2026	2,430	22
Mfuzz Soft clustering of omics time series dataMatthias Futschik	Matthias Futschik	software	28 Apr 2026	2,353	16