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Topic: SingleCell or BiomedicalInformatics or Network

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Release: Release 2.12 (2013)

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34 packages on Bioconductor tagged SingleCell or BiomedicalInformatics or Network, most distinct IPs first

SingleCell, BiomedicalInformatics and Network in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
GOSemSim
GO-terms Semantic Similarity MeasuresGuangchuang Yu		Guangchuang Yusoftware30 Jun 202627,49548
RBGL
An interface to the BOOST graph libraryBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202610,6989
graphite
GRAPH Interaction from pathway Topological EnvironmentGabriele Sales		Gabriele Salessoftware28 Apr 20267,01248
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
minet
Mutual Information NETworksPatrick E. Meyer		Patrick E. Meyersoftware28 Apr 20261,5431
RedeR
Interactive visualization and manipulation of nested networksMauro Castro		Mauro Castrosoftware14 Jul 20261,31723
BioNet
Routines for the functional analysis of biological networksMarcus Dittrich		Marcus Dittrichsoftware28 Apr 20261,26250
fmcsR
Mismatch Tolerant Maximum Common Substructure SearchingThomas Girke		Thomas Girkesoftware28 Apr 20261,08768
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataAttila Gabor		Attila Gaborsoftware28 Apr 20261,04462
GraphAT
Graph Theoretic Association TestsThomas LaFramboise		Thomas LaFramboisesoftware28 Apr 20261,02321
SANTA
Spatial Analysis of Network AssociationsAlex Cornish		Alex Cornishsoftware28 Apr 202694417
netresponse
Functional Network AnalysisLeo Lahti		Leo Lahtisoftware28 Apr 202693869
CNORfuzzy
Addon to CellNOptR: Fuzzy LogicT. Cokelaer		T. Cokelaersoftware28 Apr 202685964
SBMLR
SBML-R Interface and Analysis ToolsTomas Radivoyevitch		Tomas Radivoyevitchsoftware28 Apr 20268347
LiquidAssociation
LiquidAssociationYen-Yi Ho		Yen-Yi Hosoftware28 Apr 202681359
eiR
Accelerated similarity searching of small moleculesThomas Girke		Thomas Girkesoftware28 Apr 202679770
SPEM
S-system parameter estimation methodXinyi YANG		Xinyi YANGsoftware28 Apr 202677421
PathNet
An R package for pathway analysis using topological informationLudwig Geistlinger		Ludwig Geistlingersoftware28 Apr 20267440
ternarynet
Ternary Network EstimationMcCall N. Matthew		McCall N. Matthewsoftware28 Apr 202673126
rsbml
R support for SBML, using libsbmlMichael Lawrence		Michael Lawrencesoftware28 Apr 20267118
DriverNet
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancerJiarui Ding		Jiarui Dingsoftware28 Apr 20266931
GraphAlignment
GraphAlignmentJoern P. Meier		Joern P. Meiersoftware28 Apr 20266840
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202666831
SLGI
Synthetic Lethal Genetic Interaction		no date on record626
DEGraph
Two-sample tests on a graphLaurent Jacob		Laurent Jacobsoftware28 Apr 202661765
ppiStats
Protein-Protein Interaction Statistical Package		no date on record540