SANTA
Bioc currentSpatial Analysis of Network Associations
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
19 10 exported
Complexity
6.3 avg / 17 max
Call network
19 nodes / 20 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,934
Files
62
Compiled share
7.1%
Has compiled src
Yes
Language breakdown
API
Exported functions
10
Internal functions
6
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-04-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
8
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- 90%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 73%
Repository practices
Checks run against github.com/alexjcornish/santa on 2026-10-11.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| edgelist.humannet | data.frame | 58,636 × 3 | No other package |
| edgelist.intact | data.frame | 21,291 × 2 | No other package |
| g.bandyopadhyay.treated | igraph | 3,067 edges | No other package |
| g.bandyopadhyay.untreated | igraph | 3,067 edges | No other package |
| g.costanzo.cor | igraph | 76,434 edges | No other package |
| g.costanzo.raw | igraph | 78,701 edges | No other package |
| g.srivas.high | igraph | 5,799 edges | No other package |
| g.srivas.untreated | igraph | 6,270 edges | No other package |
| go.entrez | vector | 316 elements | No other package |
| rnai.cheung | matrix | 10,690 × 6 | No other package |
Topics
People
- Alex Cornish maintainer author
Cite
Cite this package
Run in R for the authors' entry:
citation("SANTA")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1371/journal.pcbi.1003808.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.