R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: VariantAnnotation or Bayesian or Normalization

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter

First letter

Release: Release 2.11 (2012)

In the current release or not

Bioconductor release

Clear all

23 packages on Bioconductor tagged VariantAnnotation or Bayesian or Normalization, most distinct IPs first

VariantAnnotation, Bayesian and Normalization in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202644,6566
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202631,06510
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,78668
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
pcaMethods
A collection of PCA methodsHenning Redestig		Henning Redestigsoftware28 Apr 20267,21410
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20263,714143
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,7228
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,194141
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,16820
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,03355
ACME
Algorithms for Calculating Microarray Enrichment (ACME)Sean Davis		Sean Davissoftware28 Apr 20261,0107
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202696755
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202690511
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 202682250
TurboNorm
A fast scatterplot smoother suitable for microarray normalizationMaarten van Iterson		Maarten van Itersonsoftware28 Apr 202681218
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202680594
EBcoexpress
EBcoexpress for Differential Co-Expression AnalysisJohn A. Dawson		John A. Dawsonsoftware28 Apr 202672915
MANOR
CGH Micro-Array NORmalizationPierre Neuvial		Pierre Neuvialsoftware28 Apr 20266739
CNAnorm
A normalization method for Copy Number Aberration in cancer samplesStefano Berri		Stefano Berrisoftware28 Apr 20266372
ternarynet
Ternary Network EstimationMcCall N. Matthew		McCall N. Matthewsoftware28 Apr 202658326
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202653131
BitSeq
Transcript expression inference and differential expression analysis for RNA-seq data		no date on record426
networkBMA
Regression-based network inference using Bayesian Model Averaging		no date on record239