Packages
246 packages on Bioconductor tagged SingleCell or Genetics, most distinct IPs first
SingleCell and Genetics in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| GenomicRanges Representation and manipulation of genomic intervalsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 56,974 | 10 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| GenomicFeatures Query the gene models of a given organism/assemblyH. Pagès | H. Pagès | software | 28 Apr 2026 | 19,218 | 74 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| VariantAnnotation Annotation of Genetic VariantsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 9,664 | 76 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| DECIPHER Tools for curating, analyzing, and manipulating biological sequencesErik Wright | Erik Wright | software | 30 Jul 2026 | 4,882 | 16 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| gage Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo | Weijun Luo | software | 28 Apr 2026 | 1,929 | 44 |
| QuasR Quantify and Annotate Short Reads in RMichael Stadler | Michael Stadler | software | 28 Apr 2026 | 1,551 | 114 |
| qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo | Robert Castelo | software | 28 Apr 2026 | 1,495 | 81 |
| gwascat representing and modeling data in the EMBL-EBI GWAS catalogVJ Carey | VJ Carey | software | 28 Apr 2026 | 1,475 | 110 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |
| deepSNV Detection of subclonal SNVs in deep sequencing data.Moritz Gerstung | Moritz Gerstung | software | 28 Apr 2026 | 1,286 | 79 |
| cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil | Gundula Povysil | software | 28 Apr 2026 | 1,256 | 30 |
| MLP Mean Log P AnalysisTobias Verbeke | Tobias Verbeke | software | 28 Apr 2026 | 1,191 | 47 |
| TxDb.Dmelanogaster.UCSC.dm3.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,161 | 75 |
| mosaics MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)Dongjun Chung | Dongjun Chung | software | 28 Apr 2026 | 1,146 | 45 |
| nucleR Nucleosome positioning package for RAlba Sala | Alba Sala | software | 28 Apr 2026 | 1,145 | 76 |
| VariantTools Tools for Exploratory Analysis of Variant CallsMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 1,118 | 79 |
| MEDIPS DNA IP-seq data analysisLukas Chavez | Lukas Chavez | software | 28 Apr 2026 | 1,093 | 102 |
| PREDA Position Related Data AnalysisFrancesco Ferrari | Francesco Ferrari | software | 28 Apr 2026 | 1,079 | 54 |
| BSgenome.Hsapiens.NCBI.GRCh38 Full genome sequences for Homo sapiens (GRCh38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,017 | 58 |