Packages
26 packages on Bioconductor tagged Transcription or Proteomics or DataImport, most distinct IPs first
Transcription, Proteomics and DataImport in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| rhdf5 R Interface to HDF5Hugo Gruson | Hugo Gruson | software | 14 Sep 2026 | 27,620 | 8 |
| GEOquery Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis | Sean Davis | software | 25 Oct 2026 | 15,960 | 73 |
| affyio Tools for parsing Affymetrix data filesBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 10,615 | 1 |
| oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 4,087 | 52 |
| affxparser Affymetrix File Parsing SDKKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 3,327 | 0 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |
| makecdfenv CDF Environment MakerJames W. MacDonald | James W. MacDonald | software | 28 Apr 2026 | 1,320 | 12 |
| codelink Manipulation of Codelink microarray dataDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,296 | 47 |
| affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,194 | 55 |
| limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,165 | 11 |
| RankProd Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore | Francesco Del Carratore | software | 28 Apr 2026 | 1,142 | 6 |
| altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier | Laurent Gautier | software | 28 Apr 2026 | 1,113 | 23 |
| plgem Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka | Norman Pavelka | software | 28 Apr 2026 | 1,047 | 9 |
| ctc Cluster and Tree Conversion.Antoine Lucas | Antoine Lucas | software | 28 Apr 2026 | 979 | 1 |
| PROcess Ciphergen SELDI-TOF ProcessingXiaochun Li | Xiaochun Li | software | 28 Apr 2026 | 893 | 11 |
| MANOR CGH Micro-Array NORmalizationPierre Neuvial | Pierre Neuvial | software | 28 Apr 2026 | 855 | 9 |
| beadarraySNP Normalization and reporting of Illumina SNP bead arrays | no date on record | 584 | |||
| ScISI In Silico Interactome | no date on record | 572 | |||
| ppiStats Protein-Protein Interaction Statistical Package | no date on record | 540 | |||
| simpleaffy Very simple high level analysis of Affymetrix data | no date on record | 517 | |||
| gaggle Broadcast data between R and Gaggle | no date on record | 489 | |||
| SAGx Statistical Analysis of the GeneChip | no date on record | 447 | |||
| splicegear splicegear | no date on record | 372 | |||
| SVM2CRMdata An example dataset for use with the SVM2CRM packageGuidantonio Malagoli Tagliazucchi | Guidantonio Malagoli Tagliazucchi | experiment | 5 May 2026 | 187 | 0 |