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Topic: ExperimentData or Preprocessing

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Release: Release 1.4 (2004)

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46 packages on Bioconductor tagged ExperimentData or Preprocessing, most distinct IPs first

ExperimentData and Preprocessing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
affy
Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear		Robert D. Shearsoftware28 Apr 202610,55611
vsn
Variance stabilization and calibration for microarray dataWolfgang Huber		Wolfgang Hubersoftware28 Apr 20267,53633
marray
Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 20263,3117
affyPLM
Methods for fitting probe-level modelsBen Bolstad		Ben Bolstadsoftware28 Apr 20262,43022
gcrma
Background Adjustment Using Sequence InformationZ. Wu		Z. Wusoftware28 Apr 20262,28521
affycomp
Graphics Toolbox for Assessment of Affymetrix Expression MeasuresRobert D. Shear		Robert D. Shearsoftware28 Apr 20261,3397
makecdfenv
CDF Environment MakerJames W. MacDonald		James W. MacDonaldsoftware28 Apr 20261,32012
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,2520
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202681611
RforProteomics
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto		Laurent Gattoexperiment5 May 2026566144
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026558144
simpleaffy
Very simple high level analysis of Affymetrix data		no date on record517
rama
Robust Analysis of MicroArrays		no date on record449
hapmapsnp6
Sample data - Hapmap SNP 6.0 AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20264480
ELMER.data
Data for the ELMER packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 202639011
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202638476
affypdnn
Probe Dependent Nearest Neighbours (PDNN) for the affy package		no date on record375
oligoData
Dataset samples for the oligo packageBenilton Carvalho		Benilton Carvalhoannotationno date on record37253
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202633867
miRBaseVersions.db
Collection of mature miRNA names of 22 different miRBase release versionsStefan Haunsberger		Stefan Haunsbergerannotationno date on record32743
HD2013SGI
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotypingMike Smith		Mike Smithexperiment5 May 202631987
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202631953
ConnectivityMap
Functional connections between drugs, genes and diseases as revealed by common gene-expression changesPaul Shannon		Paul Shannonexperiment5 May 20262810
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262690
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202626877