R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: RNASeq

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter: S

First letter

Release

In the current release or not

Bioconductor release

Clear all

80 packages on Bioconductor, most distinct IPs first

RNASeq in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
scuttle
Legacy Utilities for Single-Cell RNA-Seq AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202614,23639
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
scDblFinder
scDblFinderPierre-Luc Germain		Pierre-Luc Germainsoftware14 Oct 20266,116121
slingshot
Tools for ordering single-cell sequencingKelly Street		Kelly Streetsoftware28 Apr 20264,68438
scrapper
Bindings to C++ Libraries for Single-Cell AnalysisAaron Lun		Aaron Lunsoftware19 May 20263,11930
systemPipeR
systemPipeR: A Multipurpose Workflow Management System for Reproducible Data AnalysisThomas Girke		Thomas Girkesoftware28 Apr 20262,50694
splatter
Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia		Luke Zappiasoftware28 Apr 20261,55361
scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing DataDennis Kostka		Dennis Kostkasoftware28 Apr 20261,49745
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
speckle
Statistical methods for analysing single cell RNA-seq dataBelinda Phipson		Belinda Phipsonsoftware28 Apr 20261,309170
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
SGSeq
Splice event prediction and quantification from RNA-seq dataLeonard Goldstein		Leonard Goldsteinsoftware28 Apr 20261,22780
scde
Single Cell Differential ExpressionEvan Biederstedt		Evan Biederstedtsoftware28 Apr 20261,17950
SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to themH. Pagès		H. Pagèssoftware28 Apr 20261,16279
scry
Small-Count Analysis Methods for High-Dimensional DataKelly Street		Kelly Streetsoftware28 Apr 20261,14445
scMerge
scMerge: Merging multiple batches of scRNA-seq dataYingxin Lin		Yingxin Linsoftware28 Apr 20261,142173
satuRn
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing ApplicationsJeroen Gilis		Jeroen Gilissoftware28 Apr 20261,11657
SCAN.UPC
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)Stephen R. Piccolo		Stephen R. Piccolosoftware28 Apr 20261,026114
SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicingXi Wang		Xi Wangsoftware28 Apr 20261,00798
scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributionsKeegan Korthauer		Keegan Korthauersoftware28 Apr 2026978117
subSeq
Subsampling of high-throughput sequencing count dataAndrew J. Bass		Andrew J. Basssoftware28 Apr 202697845
SMITE
Significance-based Modules Integrating the Transcriptome and EpigenomeNeil Ari Wijetunga		Neil Ari Wijetungasoftware28 Apr 2026976151
SCnorm
Normalization of single cell RNA-seq dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202697167
scone
Single Cell Overview of Normalized Expression dataDavide Risso		Davide Rissosoftware28 Apr 2026962185
scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)Zhe Wang		Zhe Wangsoftware28 Apr 2026930167
SpliceWiz
interactive analysis and visualization of alternative splicing in RAlex Chit Hei Wong		Alex Chit Hei Wongsoftware28 Apr 2026913193
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
Spaniel
Spatial Transcriptomics AnalysisRachel Queen		Rachel Queensoftware28 Apr 2026890208