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Topic: DimensionReduction or CancerData or SingleCell

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126 packages on Bioconductor tagged DimensionReduction or CancerData or SingleCell, most distinct IPs first

DimensionReduction, CancerData and SingleCell in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
SingleCellExperiment
S4 Classes for Single Cell DataDavide Risso		Davide Rissosoftware28 Apr 202624,48325
scuttle
Legacy Utilities for Single-Cell RNA-Seq AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202614,23639
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
SpatialExperiment
S4 Class for Spatially Resolved -omics DataDario Righelli		Dario Righellisoftware28 Apr 202610,71864
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
SingleR
Reference-Based Single-Cell RNA-Seq AnnotationAaron Lun		Aaron Lunsoftware10 Sep 20266,76128
scDblFinder
scDblFinderPierre-Luc Germain		Pierre-Luc Germainsoftware14 Oct 20266,116121
slingshot
Tools for ordering single-cell sequencingKelly Street		Kelly Streetsoftware28 Apr 20264,68438
scrapper
Bindings to C++ Libraries for Single-Cell AnalysisAaron Lun		Aaron Lunsoftware19 May 20263,11930
scRepertoire
A toolkit for single-cell immune receptor profilingNick Borcherding		Nick Borcherdingsoftware28 Apr 20261,571115
splatter
Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia		Luke Zappiasoftware28 Apr 20261,55361
scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing DataDennis Kostka		Dennis Kostkasoftware28 Apr 20261,49745
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
speckle
Statistical methods for analysing single cell RNA-seq dataBelinda Phipson		Belinda Phipsonsoftware28 Apr 20261,309170
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq DataJoshua David Campbell		Joshua David Campbellsoftware29 Apr 20261,218392
STATegRa
Classes and methods for multi-omics data integrationDavid Gomez-Cabrero		David Gomez-Cabrerosoftware28 Apr 20261,18746
scry
Small-Count Analysis Methods for High-Dimensional DataKelly Street		Kelly Streetsoftware28 Apr 20261,14445
scMerge
scMerge: Merging multiple batches of scRNA-seq dataYingxin Lin		Yingxin Linsoftware28 Apr 20261,142173
satuRn
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing ApplicationsJeroen Gilis		Jeroen Gilissoftware28 Apr 20261,11657
SPOTlight
`SPOTlight`: Spatial Transcriptomics DeconvolutionMarc Elosua-Bayes		Marc Elosua-Bayessoftware28 Apr 20261,11046
snifter
R wrapper for the python openTSNE libraryAlan O'Callaghan		Alan O'Callaghansoftware28 Apr 20261,03325
SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Luca De Sano		Luca De Sanosoftware28 Apr 20261,01014
scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributionsKeegan Korthauer		Keegan Korthauersoftware28 Apr 2026978117
SCnorm
Normalization of single cell RNA-seq dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202697167
scone
Single Cell Overview of Normalized Expression dataDavide Risso		Davide Rissosoftware28 Apr 2026962185
scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)Zhe Wang		Zhe Wangsoftware28 Apr 2026930167
spicyR
Spatial analysis of in situ cytometry dataEllis Patrick		Ellis Patricksoftware15 Oct 2026916241
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
Spaniel
Spatial Transcriptomics AnalysisRachel Queen		Rachel Queensoftware28 Apr 2026890208