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Topic: BSgenome or Microarray

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28 packages on Bioconductor tagged BSgenome or Microarray, most distinct IPs first

BSgenome and Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ReportingTools
Tools for making reports in various formatsJason A. Hackney		Jason A. Hackneysoftware28 Apr 20261,637157
RnBeads
RnBeadsFabian Mueller		Fabian Muellersoftware28 Apr 20261,302170
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
recoup
An R package for the creation of complex genomic profile plotsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 20261,098119
ROntoTools
R Onto-Tools suiteSorin Draghici		Sorin Draghicisoftware28 Apr 20261,03333
RTopper
This package is designed to perform Gene Set Analysis across multiple genomic platformsLuigi Marchionni		Luigi Marchionnisoftware28 Apr 20261,00318
RPA
RPA: Robust Probabilistic Averaging for probe-level analysisLeo Lahti		Leo Lahtisoftware28 Apr 202695192
ROTS
Reproducibility-Optimized Test StatisticTomi Suomi		Tomi Suomisoftware28 Apr 202693035
recountmethylation
Access and analyze public DNA methylation array data compilationsSean K Maden		Sean K Madensoftware28 Apr 2026881152
rain
Rhythmicity Analysis Incorporating Non-parametric MethodsPaul F. Thaben		Paul F. Thabensoftware28 Apr 202687917
Rnits
R Normalization and Inference of Time Series dataDipen P. Sangurdekar		Dipen P. Sangurdekarsoftware28 Apr 202687543
Rmagpie
MicroArray Gene-expression-based Program In Error rate estimationCamille Maumet		Camille Maumetsoftware28 Apr 202685519
REMP
Repetitive Element Methylation PredictionYinan Zheng		Yinan Zhengsoftware28 Apr 2026841198
rbsurv
Robust likelihood-based survival modeling with microarray dataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202683213
regsplice
L1-regularization based methods for detection of differential splicingLukas M. Weber		Lukas M. Webersoftware16 Jul 202679340
RDRToolbox
A package for nonlinear dimension reduction with Isomap and LLE.Christoph Bartenhagen		Christoph Bartenhagensoftware28 Apr 202678235
RBM
RBM: a R package for microarray and RNA-Seq data analysisDongmei Li		Dongmei Lisoftware28 Apr 20267368
RegEnrich
Gene regulator enrichment analysisWeiyang Tao		Weiyang Taosoftware21 Oct 2026721148
ramr
Detection of Rare Aberrantly Methylated Regions in Array and NGS DataOleksii Nikolaienko		Oleksii Nikolaienkosoftware17 Sep 202671813
RLMM
A Genotype Calling Algorithm for Affymetrix SNP ArraysNusrat Rabbee		Nusrat Rabbeesoftware28 Apr 20267126
RRHO
Inference on agreement between ordered listsJonathan Rosenblatt		Jonathan Rosenblattsoftware28 Apr 20267118
rmspc
Multiple Sample Peak CallingMeriem Bahda		Meriem Bahdasoftware28 Apr 202662168
rifi
'rifi' analyses data from rifampicin time series created by microarray or RNAseqJens Georg		Jens Georgsoftware28 Apr 2026605129
roastgsa
Rotation based gene set analysisAdria Caballe		Adria Caballesoftware28 Apr 202658934
rifiComparative
'rifiComparative' compares the output of rifi from two different conditions.Loubna Youssar		Loubna Youssarsoftware28 Apr 2026501168
regionalpcs
Summarizing Regional Methylation with Regional Principal Components AnalysisTiffany Eulalio		Tiffany Eulaliosoftware28 Apr 202647974
randRotation
Random Rotation Methods for High Dimensional Data with Batch StructurePeter Hettegger		Peter Hetteggersoftware30 Oct 20254357
runibic
runibic: row-based biclustering algorithm for analysis of gene expression data in RPatryk Orzechowski		Patryk Orzechowskisoftware31 Oct 202538851