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Topic: MassSpectrometry or Sequencing

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17 packages on Bioconductor tagged MassSpectrometry or Sequencing, most distinct IPs first

MassSpectrometry and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
NOISeq
Exploratory analysis and differential expression for RNA-seq dataSonia Tarazona		Sonia Tarazonasoftware28 Apr 20261,32712
nucleR
Nucleosome positioning package for RAlba Sala		Alba Salasoftware28 Apr 20261,14576
NanoStringNCTools
NanoString nCounter ToolsMaddy Griswold		Maddy Griswoldsoftware28 Apr 20261,13677
NADfinder
Call wide peaks for sequencing dataJianhong Ou		Jianhong Ousoftware28 Apr 20261,122225
normr
Normalization and difference calling in ChIP-seq dataJohannes Helmuth		Johannes Helmuthsoftware21 May 20261,06483
netSmooth
Network smoothing for scRNAseqJonathan Ronen		Jonathan Ronensoftware28 Apr 2026897170
nullranges
Generation of null ranges via bootstrapping or covariate matchingMichael Love		Michael Lovesoftware28 Apr 202685887
NanoMethViz
Visualise methylation data from Oxford Nanopore sequencingShian Su		Shian Susoftware28 Apr 2026818146
nucleoSim
Generate synthetic nucleosome mapsAstrid Deschênes		Astrid Deschênessoftware28 Apr 20267789
ncGTW
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment DetectionChiung-Ting Wu		Chiung-Ting Wusoftware28 Apr 2026712144
NBAMSeq
Negative Binomial Additive Model for RNA-Seq DataXu Ren		Xu Rensoftware28 Apr 202667584
NewWave
Negative binomial model for scRNA-seqFederico Agostinis		Federico Agostinissoftware10 Aug 202664744
nempi
Inferring unobserved perturbations from gene expression dataMartin Pirkl		Martin Pirklsoftware28 Apr 2026607109
NetActivity
Compute gene set scores from a deep learning frameworkCarlos Ruiz-Arenas		Carlos Ruiz-Arenassoftware28 Apr 202660059
notame
Workflow for non-targeted LC-MS metabolic profilingVilhelm Suksi		Vilhelm Suksisoftware28 Apr 202646165
notameViz
Workflow for non-targeted LC-MS metabolic profilingVilhelm Suksi		Vilhelm Suksisoftware28 Apr 202641982
notameStats
Workflow for non-targeted LC-MS metabolic profilingVilhelm Suksi		Vilhelm Suksisoftware28 Apr 202637768