notameStats
Bioc currentWorkflow for non-targeted LC-MS metabolic profiling
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
Provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
43 25 exported
Complexity
3.5 avg / 15 max
Call network
43 nodes / 25 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,625
Files
35
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
17
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.28
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 21
- Examples that run
- 100%21 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/hanhineva-lab/notamestats on 2026-10-25.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
Topics
Suggested by (2)
People
- Vilhelm Suksi author maintainer
- Retu Haikonen author
- Kati Hanhineva author
- Anton Klåvus author copyright holder
- Ville Koistinen contributor
- Olli Kärkkäinen contributor
- Leo Lahti author
- Atte Lihtamo author
- Jussi Paananen author copyright holder
- Artur Sannikov contributor
- Oskari Timonen author copyright holder
Cite
Cite this package
Run in R for the authors' entry:
citation("notameStats")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.3390/metabo10040135.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.