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Topic: RNASeq

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28 packages on Bioconductor, most distinct IPs first

RNASeq in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqCole Trapnell		Cole Trapnellsoftware28 Apr 20264,48574
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
mbkmeans
Mini-batch K-means Clustering for Single-Cell RNA-seqDavide Risso		Davide Rissosoftware28 Apr 20261,40284
MiRaGE
MiRNA Ranking by Gene ExpressionY-h. Taguchi		Y-h. Taguchisoftware28 Apr 20261,14143
MCbiclust
Massive correlating biclusters for gene expression data and associated methodsRobert Bentham		Robert Benthamsoftware28 Apr 20261,078125
M3C
Monte Carlo Reference-based Consensus ClusteringChristopher John		Christopher Johnsoftware28 Apr 20261,04450
M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeqTallulah Andrews		Tallulah Andrewssoftware28 Apr 20261,017153
MOSim
Multi-Omics Simulation (MOSim)Sonia Tarazona		Sonia Tarazonasoftware28 Apr 2026997197
MLSeq
Machine Learning Interface for RNA-Seq DataGokmen Zararsiz		Gokmen Zararsizsoftware28 Apr 2026940134
metaSeq
Meta-analysis of RNA-Seq count data in multiple studiesKoki Tsuyuzaki		Koki Tsuyuzakisoftware28 Apr 202693815
mnem
Mixture Nested Effects ModelsMartin Pirkl		Martin Pirklsoftware28 Apr 202693478
metaseqR2
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithmsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 2026925237
MGFR
Marker Gene Finder in RNA-seq dataKhadija El Amrani		Khadija El Amranisoftware28 Apr 202678365
miRspongeR
Identification and analysis of miRNA sponge regulationJunpeng Zhang		Junpeng Zhangsoftware7 Sep 2026740259
mumosa
Multi-Modal Single-Cell Analysis MethodsAaron Lun		Aaron Lunsoftware28 Apr 202671973
marr
Maximum rank reproducibilityTusharkanti Ghosh		Tusharkanti Ghoshsoftware28 Apr 202669750
megadepth
megadepth: BigWig and BAM related utilitiesDavid Zhang		David Zhangsoftware28 Apr 202668977
magpie
MeRIP-Seq data Analysis for Genomic Power Investigation and EvaluationDaoyu Duan		Daoyu Duansoftware28 Apr 202666298
MultiRNAflow
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditionsRodolphe Loubaton		Rodolphe Loubatonsoftware28 Apr 2026633196
MetaPhOR
Metabolic Pathway Analysis of RNAEmily Isenhart		Emily Isenhartsoftware28 Apr 2026631182
multiWGCNA
multiWGCNADario Tommasini		Dario Tommasinisoftware28 Apr 2026619136
MICSQTL
MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)Qian Li		Qian Lisoftware28 Apr 2026587165
moanin
An R Package for Time Course RNASeq Data AnalysisNelle Varoquaux		Nelle Varoquauxsoftware31 Oct 202557486
mobileRNA
mobileRNA: Investigate the RNA mobilome & population-scale changesKatie Jeynes-Cupper		Katie Jeynes-Cuppersoftware28 Apr 2026546149
mitology
Study of mitochondrial activity from RNA-seq dataStefania Pirrotta		Stefania Pirrottasoftware28 Apr 2026542164
Melissa
Bayesian clustering and imputationa of single cell methylomesC. A. Kapourani		C. A. Kapouranisoftware28 Apr 2026499
mfa
Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcationsKieran Campbell		Kieran Campbellsoftwareno date on record482
MPAC
Multi-omic Pathway Analysis of CellsPeng Liu		Peng Liusoftware28 Apr 2026442170