MultiRNAflow
Bioc currentAn R package for integrated analysis of temporal RNA-seq data with multiple biological conditions
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
Our R package MultiRNAflow provides an easy to use unified framework allowing to automatically make both unsupervised and supervised (DE) analysis for datasets with an arbitrary number of biological conditions and time points. In particular, our code makes a deep downstream analysis of DE information, e.g. identifying temporal patterns across biological conditions and DE genes which are specific to a biological condition for each time.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
87 32 exported
Complexity
8.3 avg / 48 max
Call network
87 nodes / 116 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
30,955
Files
134
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
32
Internal functions
55
Testing & CI
Has tests
Yes
Test-to-code ratio
0.30
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
12
Dep constraint coverage
100%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4
System requirements
–
C++ standard
–
License
GPL-3 | file LICENSE
License flags
SPDX valid, not OSI
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
8
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 10%
Topics
People
- Rodolphe Loubaton author maintainer
- Cancéropôle Est fnd
- Région Grand Est fnd
- Nicolas Champagnat author ths
- Laurent Vallat author ths
- Pierre Vallois author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MultiRNAflow")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.