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Topic: MassSpectrometry or Proteomics or Homo_sapiens

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74 packages on Bioconductor tagged MassSpectrometry or Proteomics or Homo_sapiens, most distinct IPs first

MassSpectrometry, Proteomics and Homo_sapiens in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
mixOmics
Omics Data Integration ProjectDerek Lei		Derek Leisoftware28 Apr 20265,37083
MsCoreUtils
Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware28 Apr 20265,02413
mzID
An mzIdentML parser for RLaurent Gatto		Laurent Gattosoftware28 Apr 20264,53211
MetaboCoreUtils
Core Utils for Metabolomics DataJohannes Rainer		Johannes Rainersoftware30 Apr 20263,94024
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
MsFeatures
Functionality for Mass Spectrometry FeaturesJohannes Rainer		Johannes Rainersoftware28 Apr 20262,50531
MsExperiment
Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto		Laurent Gattosoftware28 Apr 20262,287112
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
MsBackendMgf
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) FilesRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware26 Jul 20261,34031
MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsVlad Petyuk		Vlad Petyuksoftware28 Apr 20261,236169
MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats FormatAnthony Wu		Anthony Wusoftware19 Jul 20261,19410
MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labelingDevon Kohler		Devon Kohlersoftware28 Apr 20261,044103
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
msqrob2
Robust statistical inference for quantitative LC-MS proteomicsLieven Clement		Lieven Clementsoftware28 Apr 2026992122
MetNet
Inferring metabolic networks from untargeted high-resolution mass spectrometry dataThomas Naake		Thomas Naakesoftware28 Apr 202696477
msmsTests
LC-MS/MS Differential Expression TestsJosep Gregori i Font		Josep Gregori i Fontsoftware28 Apr 2026931145
MSstatsPTM
Statistical Characterization of Post-translational ModificationsAnthony Wu		Anthony Wusoftware28 Apr 2026922113
msmsEDA
Exploratory Data Analysis of LC-MS/MS data by spectral countsJosep Gregori		Josep Gregorisoftware28 Apr 2026888140
MsBackendMsp
Mass Spectrometry Data Backend for NIST msp FilesJohannes Rainer		Johannes Rainersoftware28 Apr 202688831
MetaboAnnotation
Utilities for Annotation of Metabolomics DataJohannes Rainer		Johannes Rainersoftware28 Apr 2026849137
MetCirc
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics dataThomas Naake		Thomas Naakesoftware28 Apr 202680875
msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in MetabolomicsThomas N. Lawson		Thomas N. Lawsonsoftware28 Apr 202680370
MatrixQCvis
Shiny-based interactive data-quality exploration for omics dataThomas Naake		Thomas Naakesoftware17 Aug 2026786188
metabomxtr
A package to run mixture models for truncated metabolomics data with normal or lognormal distributionsMichael Nodzenski		Michael Nodzenskisoftware28 Apr 202677149
MSstatsQC
Longitudinal system suitability monitoring and quality control for proteomic experimentsEralp Dogu		Eralp Dogusoftware28 Apr 2026759196
MAIT
Statistical Analysis of Metabolomic DataPol Sola-Santos		Pol Sola-Santossoftware28 Apr 2026756204
MSstatsLiP
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experimentsAnthony Wu		Anthony Wusoftware28 Apr 2026741200
metabCombiner
Method for Combining LC-MS Metabolomics Feature MeasurementsHani Habra		Hani Habrasoftware28 Apr 202673387