MSstatsQC
Bioc currentLongitudinal system suitability monitoring and quality control for proteomic experiments
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
48 14 exported
Complexity
3.7 avg / 11 max
Call network
48 nodes / 63 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,734
Files
169
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
34
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.08
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic License 2.0
License flags
not SPDX, not OSI
History
Versions
18
First release
2018-03-08
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 18
- Examples that run
- 89%16 run in a plain check · 2 only when donttest examples are enabled (R CMD check --as-cran)
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 6%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
Topics
Depended on by (1)
Bioconductor (1)
People
- Eralp Dogu author maintainer
- Sara Taheri author
- Olga Vitek author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MSstatsQC")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.