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MAIT

Bioc current

Statistical Analysis of Metabolomic Data

v1.46.0 · software · GPL-2

Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

The MAIT package contains functions to perform end-to-end statistical analysis of LC/MS Metabolomic Data. Special emphasis is put on peak annotation and in modular function design of the functions.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

60 37 exported

Complexity

5.4 avg / 38 max

Call network

60 nodes / 137 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

9,634

Files

145

Compiled share

0%

Has compiled src

No

Language breakdown

R 5,602 (58.1%)Docs 2,970 (30.8%)Vignettes 1,062 (11%)

API

Exported functions

40

Internal functions

22

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

24

First release

2014-10-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.0: 9,622 LOCv3.1: 9,622 LOCv3.2: 9,622 LOCv3.3: 9,622 LOCv3.4: 9,622 LOCv3.5: 9,623 LOCv3.6: 9,630 LOCv3.7: 9,630 LOCv3.8: 9,630 LOCv3.9: 9,630 LOCv3.10: 9,630 LOCv3.11: 9,630 LOCv3.12: 9,634 LOCv3.13: 9,634 LOCv3.14: 9,634 LOCv3.15: 9,634 LOCv3.16: 9,634 LOCv3.17: 9,634 LOCv3.18: 9,634 LOCv3.19: 9,634 LOCv3.20: 9,634 LOCv3.21: 9,634 LOCv3.22: 9,634 LOCv3.23: 9,634 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

People

Pol Sola-Santos

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