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Topic: Annotation or GeneSetEnrichment

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46 packages on Bioconductor tagged Annotation or GeneSetEnrichment, most distinct IPs first

Annotation and GeneSetEnrichment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming styleHervé Pagès		Hervé Pagèssoftware28 Apr 202637,35620
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
GOSemSim
GO-terms Semantic Similarity MeasuresGuangchuang Yu		Guangchuang Yusoftware30 Jun 202627,49548
GenomicFeatures
Query the gene models of a given organism/assemblyH. Pagès		H. Pagèssoftware28 Apr 202619,21874
GSEABase
Gene set enrichment data structures and methodsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202613,34446
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
ggtreeExtra
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"Shuangbin Xu		Shuangbin Xusoftware7 Jun 20262,68281
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo		Weijun Luosoftware28 Apr 20261,92944
genomation
Summary, annotation and visualization of genomic dataAltuna Akalin		Altuna Akalinsoftware28 Apr 20261,81599
GenomicScores
Infrastructure to work with genomewide position-specific scoresRobert Castelo		Robert Castelosoftware28 Apr 20261,48483
ggmsa
Plot Multiple Sequence Alignment using 'ggplot2'Guangchuang Yu		Guangchuang Yusoftware28 Apr 20261,23193
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and AnalysisRussell Bainer		Russell Bainersoftware28 Apr 20261,17481
GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDCRuidong Li		Ruidong Lisoftware28 Apr 20261,097235
goProfiles
goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez		Alex Sanchezsoftware28 Apr 20261,06547
GOexpress
Visualise microarray and RNAseq data using gene ontology annotationsKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 20261,04579
GRaNIE
GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq dataChristian Arnold		Christian Arnoldsoftware28 Apr 20261,025151
GeneTonic
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment AnalysisFederico Marini		Federico Marinisoftware28 Apr 20261,022224
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
goSTAG
A tool to use GO Subtrees to Tag and Annotate Genes within a setBrian D. Bennett		Brian D. Bennettsoftware28 Apr 202691363
GOpro
Find the most characteristic gene ontology terms for groups of human genesLidia Chrabaszcz		Lidia Chrabaszczsoftware16 Sep 202689588
GOfuncR
Gene ontology enrichment using FUNCSteffi Grote		Steffi Grotesoftware31 Oct 202588651
geneXtendeR
Optimized Functional Annotation Of ChIP-seq DataBohdan Khomtchouk		Bohdan Khomtchouksoftware4 Nov 2025854115
GSEABenchmarkeR
Reproducible GSEA BenchmarkingLudwig Geistlinger		Ludwig Geistlingersoftware28 Apr 2026816109
GWENA
Pipeline for augmented co-expression analysisGwenaëlle Lemoine		Gwenaëlle Lemoinesoftware28 Apr 2026815123
GSReg
Gene Set Regulation (GS-Reg)Bahman Afsari		Bahman Afsarisoftware28 Apr 202680583
GenomicOZone
Delineate outstanding genomic zones of differential gene activityHua Zhong		Hua Zhongsoftware28 Apr 2026734155
gsean
Gene Set Enrichment Analysis with NetworksDongmin Jung		Dongmin Jungsoftware28 Apr 2026719106