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Topic: RNASeq or Homo_sapiens or Epigenetics

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44 packages on Bioconductor tagged RNASeq or Homo_sapiens or Epigenetics, most distinct IPs first

RNASeq, Homo_sapiens and Epigenetics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202632,07254
DropletUtils
Utilities for Handling Single-Cell Droplet DataJonathan Griffiths		Jonathan Griffithssoftware27 Sep 20264,10759
DEXSeq
Inference of differential exon usage in RNA-SeqHugo Gruson		Hugo Grusonsoftware28 Apr 20262,837107
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
dittoSeq
User Friendly Single-Cell and Bulk RNA Sequencing VisualizationDaniel Bunis		Daniel Bunissoftware28 Apr 20261,83155
DSS
Dispersion shrinkage for sequencing dataHao Wu		Hao Wusoftware28 Apr 20261,70291
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approachLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,535137
DEGreport
Report of DEG analysisLorena Pantano		Lorena Pantanosoftware28 Apr 20261,462108
dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer		Keegan Korthauersoftware28 Apr 20261,201149
DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqMalgorzata Nowicka		Malgorzata Nowickasoftware28 Apr 20261,19852
derfinderHelper
derfinder helper packageLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,19613
derfinderPlot
Plotting functions for derfinderLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,083149
DaMiRseq
Data Mining for RNA-seq data: normalization, feature selection and classificationMattia Chiesa		Mattia Chiesasoftware28 Apr 20261,055258
DEGseq
Identify Differentially Expressed Genes from RNA-seq dataLikun Wang		Likun Wangsoftware28 Apr 20261,03332
DEFormats
Differential gene expression data formats converterAndrzej Oleś		Andrzej Oleśsoftware28 Apr 20261,00061
DEScan2
Differential Enrichment Scan 2Dario Righelli		Dario Righellisoftware28 Apr 2026978128
DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experimentsAristidis G. Vrahatis		Aristidis G. Vrahatissoftware28 Apr 2026971100
debrowser
Interactive Differential Expresion Analysis BrowserAlper Kucukural		Alper Kucukuralsoftware28 Apr 2026929223
dreamlet
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designsGabriel Hoffman		Gabriel Hoffmansoftware28 Apr 2026912195
doppelgangR
Identify likely duplicate samples from genomic or meta-dataLevi Waldron		Levi Waldronsoftware28 Apr 202686378
DESpace
DESpace: a framework to discover spatially variable genes and differential spatial patterns across conditionsPeiying Cai		Peiying Caisoftware7 Oct 2026852122
distinct
distinct: a method for differential analyses via hierarchical permutation testsSimone Tiberi		Simone Tiberisoftware24 Sep 202684388
deconvR
Simulation and Deconvolution of Omic ProfilesIrem B. Gündüz		Irem B. Gündüzsoftware28 Apr 2026824184
dupRadar
Assessment of duplication rates in RNA-Seq datasetsSergi Sayols		Sergi Sayolssoftware28 Apr 202681510
DegNorm
DegNorm: degradation normalization for RNA-seq dataJi-Ping Wang		Ji-Ping Wangsoftware28 Apr 2026805157
DEsingle
DEsingle for detecting three types of differential expression in single-cell RNA-seq dataZhun Miao		Zhun Miaosoftware28 Apr 202677839
dearseq
Differential Expression Analysis for RNA-seq data through a robust variance component testBoris P. Hejblum		Boris P. Hejblumsoftware28 Apr 202677155
discordant
The Discordant Method: A Novel Approach for Differential CorrelationMcGrath Max		McGrath Maxsoftware28 Apr 202673629
DepecheR
Determination of essential phenotypic elements of clusters in high-dimensional entitiesJakob Theorell		Jakob Theorellsoftware28 Apr 2026734104