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Topic: ExpressionData or Epigenetics or DifferentialExpression

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51 packages on Bioconductor tagged ExpressionData or Epigenetics or DifferentialExpression, most distinct IPs first

ExpressionData, Epigenetics and DifferentialExpression in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202632,07254
decoupleR
decoupleR: Ensemble of computational methods to infer biological activities from omics dataPau Badia-i-Mompel		Pau Badia-i-Mompelsoftware30 Oct 20253,63441
DEXSeq
Inference of differential exon usage in RNA-SeqHugo Gruson		Hugo Grusonsoftware28 Apr 20262,837107
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
DSS
Dispersion shrinkage for sequencing dataHao Wu		Hao Wusoftware28 Apr 20261,70291
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approachLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,535137
DEGreport
Report of DEG analysisLorena Pantano		Lorena Pantanosoftware28 Apr 20261,462108
dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer		Keegan Korthauersoftware28 Apr 20261,201149
DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqMalgorzata Nowicka		Malgorzata Nowickasoftware28 Apr 20261,19852
derfinderHelper
derfinder helper packageLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,19613
derfinderPlot
Plotting functions for derfinderLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,083149
DEqMS
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.Yafeng Zhu		Yafeng Zhusoftware28 Apr 20261,05334
DEGseq
Identify Differentially Expressed Genes from RNA-seq dataLikun Wang		Likun Wangsoftware28 Apr 20261,03332
DEFormats
Differential gene expression data formats converterAndrzej Oleś		Andrzej Oleśsoftware28 Apr 20261,00061
DEScan2
Differential Enrichment Scan 2Dario Righelli		Dario Righellisoftware28 Apr 2026978128
DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experimentsAristidis G. Vrahatis		Aristidis G. Vrahatissoftware28 Apr 2026971100
ddCt
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)Jitao David Zhang		Jitao David Zhangsoftware28 Apr 202696912
daMA
Efficient design and analysis of factorial two-colour microarray dataJobst Landgrebe		Jobst Landgrebesoftware28 Apr 20269396
debrowser
Interactive Differential Expresion Analysis BrowserAlper Kucukural		Alper Kucukuralsoftware28 Apr 2026929223
DART
Denoising Algorithm based on Relevance network TopologyCharles Shijie Zheng		Charles Shijie Zhengsoftware28 Apr 202692217
dreamlet
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designsGabriel Hoffman		Gabriel Hoffmansoftware28 Apr 2026912195
dcanr
Differential co-expression/association network analysisDharmesh D. Bhuva		Dharmesh D. Bhuvasoftware28 Apr 202690635
DFP
Gene SelectionRodrigo Alvarez-Glez		Rodrigo Alvarez-Glezsoftware28 Apr 20268987
DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq dataTing Gong		Ting Gongsoftware13 Mar 2026877
DEWSeq
Differential Expressed Windows Based on Negative Binomial Distributionbioinformatics team Hentze		bioinformatics team Hentzesoftware28 Apr 202685559
DESpace
DESpace: a framework to discover spatially variable genes and differential spatial patterns across conditionsPeiying Cai		Peiying Caisoftware7 Oct 2026852122
distinct
distinct: a method for differential analyses via hierarchical permutation testsSimone Tiberi		Simone Tiberisoftware24 Sep 202684388
DegNorm
DegNorm: degradation normalization for RNA-seq dataJi-Ping Wang		Ji-Ping Wangsoftware28 Apr 2026805157
doseR
doseRake.vastermark		ake.vastermarksoftware28 Apr 202679645