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Topic: AffymetrixChip or Homo_sapiens or Sequencing

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128 packages on Bioconductor tagged AffymetrixChip or Homo_sapiens or Sequencing, most distinct IPs first

AffymetrixChip, Homo_sapiens and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ComplexHeatmap
Make Complex HeatmapsZuguang Gu		Zuguang Gusoftware28 Apr 202623,95129
cigarillo
Efficient manipulation of CIGAR stringsHervé Pagès		Hervé Pagèssoftware14 Jul 202617,59015
ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and VisualizationGuangchuang Yu		Guangchuang Yusoftware28 Apr 20263,962158
celda
CEllular Latent Dirichlet AllocationJoshua Campbell		Joshua Campbellsoftware28 Apr 20262,337127
chromVAR
Chromatin Variation Across RegionsAlicia Schep		Alicia Schepsoftware11 May 20262,255134
ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval dataJianhong Ou		Jianhong Ousoftware10 Aug 20261,898125
chipseq
chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,62654
csaw
ChIP-Seq Analysis with WindowsAaron Lun		Aaron Lunsoftware28 Apr 20261,53646
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,25630
cleanUpdTSeq
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending dataJianhong Ou		Jianhong Ousoftware28 Apr 20261,23479
ChIPQC
Quality metrics for ChIPseq dataTom Carroll		Tom Carrollsoftware19 May 20261,221159
clusterExperiment
Compare Clusterings for Single-Cell SequencingElizabeth Purdom		Elizabeth Purdomsoftware28 Apr 20261,150147
CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome miningCharles Plessy		Charles Plessysoftware28 Apr 20261,109174
compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methodsCharlotte Soneson		Charlotte Sonesonsoftware10 Sep 20261,10390
cogena
co-expressed gene-set enrichment analysisZhilong Jia		Zhilong Jiasoftware28 Apr 20261,090144
cqn
Conditional quantile normalizationKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20261,08716
CrispRVariants
Tools for counting and visualising mutations in a target locationHelen Lindsay		Helen Lindsaysoftware28 Apr 20261,08186
cicero
Predict cis-co-accessibility from single-cell chromatin accessibility dataHannah Pliner		Hannah Plinersoftware28 Apr 20261,077179
ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing DataPeter Humburg		Peter Humburgsoftware28 Apr 20261,06262
CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using BioconductorMalte Thodberg		Malte Thodbergsoftware28 Apr 20261,053158
compEpiTools
Tools for computational epigenomicsMattia Furlan		Mattia Furlansoftware28 Apr 20261,049163
CexoR
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicatesPedro Madrigal		Pedro Madrigalsoftware28 Apr 20261,027101
CNVrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.Hoang Tan Nguyen		Hoang Tan Nguyensoftware28 Apr 20261,00191
chipenrich
Gene Set Enrichment For ChIP-seq Peak DataKai Wang		Kai Wangsoftware28 Apr 2026997158
countsimQC
Compare Characteristic Features of Count Data SetsCharlotte Soneson		Charlotte Sonesonsoftware28 Apr 2026990125
ChIPsim
Simulation of ChIP-seq experimentsPeter Humburg		Peter Humburgsoftware28 Apr 202698654
cTRAP
Identification of candidate causal perturbations from differential gene expression dataNuno Saraiva-Agostinho		Nuno Saraiva-Agostinhosoftware28 Apr 2026975154
COCOA
Coordinate Covariation AnalysisJohn Lawson		John Lawsonsoftware28 Apr 2026965126
CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome SequencingYuchao Jiang		Yuchao Jiangsoftware28 Apr 202696461
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994