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62 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
S4Vectors
Foundation of vector-like and list-like containers in BioconductorHervé Pagès		Hervé Pagèssoftware16 Sep 202674,7547
clusterProfiler
A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu		Guangchuang Yusoftware19 Oct 202629,661138
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis		Sean Davissoftware25 Oct 202615,96073
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
UCell
Rank-based signature enrichment analysis for single-cell dataMassimo Andreatta		Massimo Andreattasoftware28 Apr 20263,92441
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
microbiome
Microbiome AnalyticsLeo Lahti		Leo Lahtisoftware28 Apr 20263,10980
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
OmnipathR
OmniPath web service client and moreDenes Turei		Denes Tureisoftware30 Apr 20262,68589
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
celda
CEllular Latent Dirichlet AllocationJoshua Campbell		Joshua Campbellsoftware28 Apr 20262,337127
annotatr
Annotation of Genomic Regions to Genomic AnnotationsRaymond G. Cavalcante		Raymond G. Cavalcantesoftware27 Sep 20261,482118
orthogene
Gene mapping made easyBrian Schilder		Brian Schildersoftware29 Apr 20261,309166
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
scMerge
scMerge: Merging multiple batches of scRNA-seq dataYingxin Lin		Yingxin Linsoftware28 Apr 20261,142173
ORFik
Open Reading Frames in GenomicsHaakon Tjeldnes		Haakon Tjeldnessoftware28 Apr 20261,107134
animalcules
Interactive microbiome analysis toolkitW. Evan Johnson		W. Evan Johnsonsoftware28 Apr 2026957189
BiocPkgTools
Collection of simple tools for learning about Bioconductor PackagesSean Davis		Sean Davissoftware9 Jul 2026952101
immApex
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep LearningNick Borcherding		Nick Borcherdingsoftware28 Apr 202693354
MSstatsPTM
Statistical Characterization of Post-translational ModificationsAnthony Wu		Anthony Wusoftware28 Apr 2026922113
Rarr
Read Zarr Files in RHugo Gruson		Hugo Grusonsoftware31 May 202691829
spicyR
Spatial analysis of in situ cytometry dataEllis Patrick		Ellis Patricksoftware15 Oct 2026916241
curatedMetagenomicData
Curated Metagenomic Data of the Human MicrobiomeLucas schiffer		Lucas schifferexperiment5 May 2026913148
motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding SitesSimon Gert Coetzee		Simon Gert Coetzeesoftware7 Oct 2026876178
AlpsNMR
Automated spectraL Processing System for NMRSergio Oller Moreno		Sergio Oller Morenosoftware28 Apr 2026874124
musicatk
Mutational Signature Comprehensive Analysis ToolkitJoshua D. Campbell		Joshua D. Campbellsoftware28 Apr 2026872275
HiContacts
Analysing cool files in R with HiContactsJacques Serizay		Jacques Serizaysoftware28 Apr 2026859104
simpleSeg
A package to perform simple cell segmentationEllis Patrick		Ellis Patricksoftware28 Apr 2026846146