R Observatory: Metrics for ExpressionCellNet version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ExpressionCellNet

0.1.2Package record

Network-Based Analysis of Gene Expression Perturbations

0packages depend

3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Ehsan KeramatiCRAN page ↗

Network-centric framework for integrative analysis of high-throughput gene expression data using user-supplied gene-gene interaction graphs. Constructs seed-centered multi-generation networks constrained by expression correlations and simulates expression perturbation scenarios via regression-based prediction (van Dam, 2018).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ExpressionCellNet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-expressioncellnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ExpressionCellNet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ExpressionCellNet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK13 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 21 (2 internal)includes a package overview page
Examples that run: 100%18 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #18,025 · ~8/day · ~251/mo

Releases R versions

Daily download trend is not available in this view yet.

29430 days

69790 days

3K1 year

Compare downloads with other packages →

Also on51 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing ExpressionCellNet adds 33 packages (18 with compiled code, 38 MB of source tarballs). Heaviest: BH 14 MB, ggplot2 6.0 MB, igraph 4.8 MB.

Depends (1)

R >= 4.1.0

Imports (5)

igraph ggplot2 uwot Metrics crayon

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Ehsan Keramati

Author, Maintainer since 0.1.1 (2026)

Releases (2)

Pick two releases to compare their code metrics.

0.1.2Latest
record
2026-07-04 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.1.1
record
2026-03-04
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-04
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Bundled data: 18 KB / 1 file
Download size: 36 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ExpressionCellNet")

Format

Keramati, E. (2026). ExpressionCellNet: Network-Based Analysis of Gene Expression Perturbations (Version 0.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ExpressionCellNet

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ExpressionCellNet version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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