R Observatory: Metrics for tinyarray version 3.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tinyarray

3.0.0Package record

Expression Data Analysis and Visualization

0packages depend

14.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Xiaojie SunCRAN page ↗

A toolkit for microarray and RNA-seq data analysis, including annotation conversion, differential expression, enrichment, survival analysis, and visualization.

Install

R (CRAN)Ubuntu (r2u)

install.packages("tinyarray", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tinyarray

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-27
ERROR12 OK, 1 ERROR2026-06-21
OK13 OK2026-06-09

Show 6 earlier changesHide 6 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10
ERROR12 OK, 1 ERROR2026-05-03
OK12 OK2026-04-25
NOTE13 OK, 1 NOTE2026-03-12
ERROR12 OK, 1 NOTE, 1 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 3.0.0

READMEYes · 3,684 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 64
Examples that run: 75%47 run in a plain check (20 of them under a condition) · 14 never run · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

14.5K

CRAN downloads in the past year

Rank #2,579 · ~40/day · ~1.2K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.6K30 days

6K90 days

14.5K1 year

Compare downloads with other packages →

Also on121 r2u1.4K bioconda67 c2d4u

How downloads are counted

Repository

xjsun1221/tinyarray ↗Historical

Last recorded for this package on 2026-08-01. This package no longer links to it, so this repository is no longer tracked.

How these are measured

PracticesHistoricalBeta

3 development-tooling and community-health practices detected across 2 families in the repository last recorded for this package

Checks last ran against github.com/xjsun1221/tinyarray on 2026-08-02. This package no longer links to it, so this is no longer updated.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

35 external dependencies (excludes base and recommended)

Installing tinyarray adds 114 packages (60 with compiled code, 100 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 4.3.0

Imports (12)

Hmisc dplyr ggplot2 limma patchwork pheatmap stringr curl httr2survivalsurvminer tibble

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Xiaojie Sun

Author, Maintainer since 2.2.6 (2021)

Releases (11)

Pick two releases to compare their code metrics.

3.0.0Latest
record
2026-08-02 · current release · diff ↗ ·
added 4 exports
auto_geo_group, get_ids, trans_ensembl_exp, trans_entrez_exp
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.4.3
record
2025-03-05 · diff ↗ ·
added 1 export
geo_parser
2.4.2
record
2024-06-13 · diff ↗
2.4.1
record
2024-06-04 · diff ↗
unarchivedReturned to CRAN
2024-06-03
archivedRemoved from CRAN
2024-05-04
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
2.3.3
record
2024-04-09 · diff ↗ ·
added 2 exports
corheatmap, corscatterplot
2.3.2
record
2024-01-22 · diff ↗ ·
added 3 exports
get_count_txt, get_gpl_txt, trans_entrezexp
2.3.1
record
2023-08-18 · diff ↗ ·
removed 1 export
%>%

added 1 export
plot_deg
unarchivedReturned to CRAN
2023-04-24
2.3.0
record
2023-04-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-04-17
policy violation On Internet access. (In '\donttest' examples.)

Show 5 earlier eventsHide 5 earlier events

2.2.9
record
2023-03-04 · diff ↗ ·
added 3 exports
%>%, risk_plot, trans_exp_new
R
R 4.2.0 released · 2022-04-22
2.2.7
record
2021-11-08 · diff ↗
2.2.6
record
2021-09-14
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-14
Total releases: 11 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.3.0
Bundled data: 1.4 MB / 11 files
Download size: 1.5 MB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tinyarray")

Format

Sun, X. (2026). tinyarray: Expression Data Analysis and Visualization (Version 3.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.tinyarray

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tinyarray version 3.0.0 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →