R Observatory: Metrics for AnnoProbe version 0.1.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AnnoProbe

0.1.7

Annotate the Gene Symbols for Probes in Expression Array

1packages depend

12.1Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Yonghe XiaFirst published 2021-06-214 releasesCRAN page ↗GitHub ↗

We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies('Affymetrix','Illumina','Agilent'), by aligning the 'Fasta' sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("AnnoProbe", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jmzeng1314/AnnoProbe")

Development version from jmzeng1314/AnnoProbe. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-annoprobe

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-AnnoProbe

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-devel-linux-x86_64-debian-clang

Slowest check: 2.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

11

Dependencies · direct

Check history

ERROR2026-08-15
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

OK2026-04-09
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-02
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 89%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

12.1K

CRAN downloads in the past year

Rank #3,567 · ~33/day · ~1K/mo

Releases R versions

Daily download trend is not available in this view yet.

88230 days

2.8K90 days

12.1K1 year

Compare downloads with other packages →

Also on137 r2u8 autocran

Repository

GitHub ↗ jmzeng1314/annoprobe

120Stars

39Forks

10Open issues

1Open PRs

0Releases

10Commits

2Contributors

10 commits · Last activity 2022-11-12 · 0% stars, 30d

Stars over time

2025-07-30 · 1082026-07-07 · 120

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jmzeng1314/annoprobe on 2026-08-09.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (11)

ggplot2 DT ggpubr pheatmaputilsmethodsBiobasestatsxml2 httr curl

LinkingTo (0)

none

Suggests (4)

limma GEOquery knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

tinyarray

Code & Tests

People & History

People (3)

Maintainer (1)

Yonghe Xia

Contributor, Maintainer

Authors (2)

Yujia Xiang

Author

Jianming Zeng

Author

Contributors (1)

Yonghe Xia

Contributor, Maintainer

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.7Latest
2022-11-14 · current release · diff ↗
unarchivedReturned to CRAN
2022-11-14
archivedRemoved from CRAN
2022-11-07
repeated policy violation On Internet access
R
R 4.2.0 released · 2022-04-22
0.1.6
2021-07-12 · diff ↗
0.1.5
2021-07-07 · diff ↗
0.1.4
2021-06-21
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-21
Total releases: 4 / 5 yrs
License: Apache License (>= 2)
Minimum R: ≥ 3.4.0
Bundled data: 261 KB / 2 files
Download size: 2.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AnnoProbe")

Format

Xia, Y., Xiang, Y., & Zeng, J. (2022). AnnoProbe: Annotate the Gene Symbols for Probes in Expression Array (Version 0.1.7) [Computer software]. https://doi.org/10.32614/CRAN.package.AnnoProbe

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AnnoProbe version 0.1.7 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →