R Observatory: Metrics for tidysdm version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tidysdm

1.0.4Package record

Species Distribution Models with Tidymodels

0packages depend

6.4Kdownloads / year

75.0%test coverage

13/13flavors OK

Overview

About

Maintained by Andrea ManicaCRAN page ↗GitHub ↗Website ↗Issues ↗

Fit species distribution models (SDMs) using the 'tidymodels' framework, which provides a standardised interface to define models and process their outputs. 'tidysdm' expands 'tidymodels' by providing methods for spatial objects, models and metrics specific to SDMs, as well as a number of specialised functions to process occurrences for contemporary and palaeo datasets. The full functionalities of the package are described in Leonardi et al. (2024) doi:10.1111/2041-210X.14406.

Changes in 1.0.4

improve documentation of calib_class_threshold and implement collect_calib_thresh
update saved objects to the new version of xgboost

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tidysdm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EvolEcolGroup/tidysdm")

Development version from EvolEcolGroup/tidysdm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tidysdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tidysdm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tidysdm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 15.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25

Show 3 earlier changesHide 3 earlier changes

NOTE11 OK, 3 NOTE2026-04-24
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-20
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 632 wordsVignettesYes · 4 · dynamicNEWSYes · 100% structured · mentions 1.0.4Citation fileNoWebsiteYes · pkgdown

Help pages: 73 (12 internal)includes a package overview page
Examples that run: 97%29 run in a plain check (6 of them under a condition) · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 50%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 7%

Vignettes (4)

How these are measured

Downloads

6.4K

CRAN downloads in the past year

Rank #7,298 · ~17/day · ~529/mo

Releases R versions

Daily download trend is not available in this view yet.

46430 days

1.2K90 days

6.4K1 year

Compare downloads with other packages →

Also on190 r2u4 autocran1.1K conda_forge

How downloads are counted

Repository

evolecolgroup/tidysdm ↗Organization: EvolEcolGroup

37Stars

11Forks

3Open issues

2Open PRs

6Releases

612Commits

16Commit identities

rspecies-distribution-modellingtidymodels

License file reads as AGPL-3.0 · 612 commits · Last activity 2026-07-15 · 0% stars, 30d · Default branch at 1.0.4.9007, ahead of CRAN 1.0.4 (checked 2026-10-11)

Responsiveness

How these are sampled

PRs merged (all time): 86%
Median days to close, 50 most recently updated closed issues: 6
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-08-15 · 342026-07-07 · 37

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/evolecolgroup/tidysdm on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (3)

Code of conductContributing guideIssue templates

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-07-15 · The repository has a site deploy workflow

pkgdown site last built 2025-12-14

Coverage (2)

Coverage reporting.covrignore

Show all practicesHide 3 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (2)

lintrLint workflow

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen 2026-07-01
Named in .Rbuildignore: .claude
GitHub Copilotfirst seen 2026-07-15
Pull request: opened by its own account
Commits: 2 by its own account

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

41 external dependencies (excludes base and recommended)

Installing tidysdm adds 126 packages (58 with compiled code, 120 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (3)

R >= 3.5.0tidymodels spatialsample

Imports (22)

DALEX dials dplyr ggplot2 lubridate maxnetmethodsparsnip patchwork recipes rsample rlangstatsstars sf terra tibble tune xgboost workflows workflowsets yardstick

LinkingTo (0)

none

Suggests (20)

blockCV data.table DALEXtra doParallel earth kernlab knitrmgcvoverlapping pastclim ranger rgbif rmarkdown spelling stacks testthat tidyterra vdiffr ggpattern RhpcBLASctl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Andrea Manica

Author, Maintainer since 0.9.2 (2023)

Margherita Colucci

Author

Michela Leonardi

Author

Andrea Vittorio Pozzi

Author · added in 1.0.0

Eleanor M.L. Scerri

Author · added in 1.0.0

Ben Tupper

Contributor · added in 1.0.0

Listed in earlier versions (1)

Andrea Pozzi

no longer listed · 0.9.5

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.4Latest
record
2025-12-13 · current release · diff ↗ ·
added 1 export
collect_class_thresh
1.0.3
record
2025-09-05 · diff ↗
1.0.2
record
2025-08-22 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.0
record
2025-03-05 · diff ↗ ·
added 1 export
make_mask_from_presence
0.9.5
record
2024-06-23 · diff ↗ ·
removed 1 export
filter_high_cor_algorithm

added 6 exports
clamp_predictors, extrapol_mess, filter_collinear, niche_overlap, sample_background, sample_background_time
R
R 4.4.0 released · 2024-04-24
0.9.4
record
2024-03-05 · diff ↗
0.9.3
record
2024-01-17 · diff ↗
0.9.2
record
2023-11-13
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-13
Total releases: 8 / 3 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.5 MB / 5 files
Download size: 3.3 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tidysdm")

Format

Manica, A., Colucci, M., Leonardi, M., Pozzi, A. V., Scerri, E. M. L., & Tupper, B. (2025). tidysdm: Species Distribution Models with Tidymodels (Version 1.0.4) [Computer software]. https://doi.org/10.32614/CRAN.package.tidysdm

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tidysdm version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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