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ruminate

A Pharmacometrics Data Transformation and Analysis Tool

v0.3.2 · Nov 3, 2025 · BSD_2_clause + file LICENSE

Description

Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.

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CRAN Check Status

13 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Packages required but not available:
  'flextable', 'formods', 'onbrand', 'plotly'

Packages suggested but not available for checking:
  'babelmixr2', 'nonmem2rx', 'nlmixr2', 'ubiquity'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
WARNING 12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Jun 7, 2026
WARNING r-devel-linux-x86_64-debian-gcc

DESCRIPTION meta-information

Fatal error: cannot create 'R_TempDir'
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies digest dplyr DT flextable formods ggplot2 onbrand PKNCA plotly rhandsontable rlang shiny shinyAce shinyWidgets stringr +3 more dependencies ruminate

Version History

9 tracked
new 0.3.2 Mar 10, 2026
updated 0.3.2 ← 0.3.1 diff Nov 3, 2025
updated 0.3.1 ← 0.2.4 diff Jan 9, 2025
updated 0.2.4 ← 0.2.3 diff May 27, 2024
updated 0.2.3 ← 0.2.2 diff May 18, 2024
updated 0.2.2 ← 0.2.1 diff Mar 13, 2024
updated 0.2.1 ← 0.2.0 diff Dec 10, 2023
updated 0.2.0 ← 0.1.1 diff Dec 1, 2023
new 0.1.1 Aug 28, 2023