R Observatory: Metrics for rrBLUP version 4.6.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

rrBLUP

4.6.3

Ridge Regression and Other Kernels for Genomic Selection

14packages depend

38.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Jeffrey EndelmanFirst published 2011-05-0832 releasesCRAN page ↗

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, doi:10.3835/plantgenome2011.08.0024). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("rrBLUP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rrblup

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rrBLUP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rrBLUP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 58 s · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

4

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

38.2K

CRAN downloads in the past year

Rank #2,861 · ~105/day · ~3.2K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.5K30 days

5.1K90 days

38.2K1 year

Compare downloads with other packages →

Also on244 r2u9 autocran2.8K conda_forge49 c2d4u

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (4)

statsgraphicsgrDevicesparallel

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

14direct

0indirect

BWGS GROAN Ghat PopVar RAINBOWR factReg GINAX GSbench MoBPS dartR dartR.base dartR.captive dartR.spatial polyRAD

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Jeffrey Endelman

no longer listed · 1.0 to 4.6.3

Package Timeline

32 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
4.6.3Latest
2023-12-10 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
4.6.2
2023-01-06 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
4.6.1
2019-12-18 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
4.6
2018-01-28 · diff ↗
4.5
2017-06-13 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03

Show 33 earlier events

4.4
2015-10-28 · diff ↗
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
4.3
2014-03-06 · diff ↗
4.2
2013-06-18 · diff ↗
R
R 3.0.0 released · 2013-04-03
4.1
2012-12-21 · diff ↗
4.0
2012-09-18 · diff ↗
3.8
2012-05-17 · diff ↗
3.7
2012-04-10 · diff ↗
3.6
2012-04-03 · diff ↗
R
R 2.15.0 released · 2012-03-30
3.5
2012-02-14 · diff ↗
3.4
2012-02-06 · diff ↗
3.3
2012-02-01 · diff ↗
3.2
2012-01-25 · diff ↗
3.1
2012-01-05 · diff ↗
3.0
2012-01-04 · diff ↗
2.8
2011-12-17 · diff ↗
2.7
2011-12-02 · diff ↗
2.5
2011-11-23 · diff ↗
2.3
2011-11-10 · diff ↗
2.2
2011-11-05 · diff ↗
2.1
2011-11-02 · diff ↗
R
R 2.14.0 released · 2011-10-31
2.0
2011-10-14 · diff ↗
1.8
2011-09-29 · diff ↗
1.7
2011-09-23 · diff ↗
1.6
2011-09-21 · diff ↗
1.2
2011-08-17 · diff ↗
1.1
2011-05-20 · diff ↗
1.0
2011-05-08
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-05-08
Total releases: 32 / 15 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0
Download size: 17 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Agricultural Science Mixed, Multilevel, and Hierarchical Models in R

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rrBLUP")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rrBLUP version 4.6.3 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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