R Observatory: Metrics for MoBPS version 1.13.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MoBPS

1.13.1Package record

Modular Breeding Program Simulator

0packages depend

4.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Torsten PookCRAN page ↗

Framework for the simulation framework for the simulation of complex breeding programs and compare their economic and genetic impact. Associated publication: Pook et al. (2020) doi:10.1534/g3.120.401193.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MoBPS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mobps

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MoBPS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MoBPS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 8.6 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25

Show 1 earlier changeHide 1 earlier change

NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.13.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 178
Examples that run: 100%152 run in a plain check
Exported functions with examples: 99%
Documented parameters: 100%
Return-value docs: 98%
Help pages citing references: 0%

How these are measured

Downloads

4.1K

CRAN downloads in the past year

Rank #7,532 · ~11/day · ~345/mo

Releases R versions

Daily download trend is not available in this view yet.

38530 days

1.2K90 days

4.1K1 year

Compare downloads with other packages →

Also on106 r2u5 autocran58 c2d4u

How downloads are counted

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Installing MoBPS adds no packages beyond those that come with R.

Depends (1)

R >= 3.0

Imports (3)

graphicsstatsutils

LinkingTo (0)

none

Suggests (30)

EMMREML BGLRMASSdoMPI doRNGcompilerforeach sommer vcfR jsonlite rrBLUP biomaRtMatrixdoParallel RColorBrewer optiSel alstructure NAM gplots phylogram cPCG VariantAnnotation GenomicRanges IRanges MatrixGenerics Rsamtools visPedigree data.tablemethodsgenio

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Torsten Pook

Author, Maintainer since 1.4.87 (2020)

Johannes Geibel

Contributor · added in 1.13.1

Azadeh Hassanpour

Contributor · added in 1.13.1

Tobias Niehoff

Contributor · added in 1.13.1

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.13.1Latest
record
2025-10-29 · current release · diff ↗ ·
removed 5 exports
compute.costs, compute.costs.cohorts, compute.snps, get.individual.loc, get.reliabilities

added 70 exports
add.diversity, add.fixed.effects, breeding.intern1, breeding.intern2, breeding.intern3, breeding.intern4, breeding.intern5, breeding.intern6, breeding.intern7, breeding.intern8, computing.costs, computing.costs.cohorts, computing.snps, exist.cohort, get.allele.freq, get.cohorts.individual, get.computing.time, get.culling.time, get.culling.type, get.fixed.effects.p, get.geno.time, get.index, get.is.first, get.is.last, get.litter, get.litter.effect, get.maf, get.ngen, get.nindi, get.ntrait and 40 more
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
unarchivedReturned to CRAN
2021-11-09
1.6.64
record
2021-11-09 · diff ↗
archivedRemoved from CRAN
2021-09-19
check problems were not corrected in time
unarchivedReturned to CRAN
2021-08-23
1.6.54
record
2021-08-23 · diff ↗ ·
removed 2 exports
ensembl.map, kinship.exp.store

added 37 exports
add.array, add.combi, add.diag, add.founder.kinship, breeding.intern, calculate.bv, check.parents, codeOriginsR, combine.traits, compute.snps, decodeOriginsR, demiraculix, derive.loop.elements, diag.mobps, founder.simulation, get.admixture, get.dendrogram, get.dendrogram.heatmap, get.dendrogram.trait, get.distance, get.effect.freq, get.effective.size, get.genotyped.snp, get.infos, get.npheno, get.phylogenetic.tree, get.qtl, get.qtl.effects, get.qtl.variance, get.selectionbve and 7 more
R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-05-12
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
1.4.87
record
2020-03-28
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-03-28
Total releases: 4 / 6 yrs
License: GPL (>= 3) OSI
Additional repositories: tpook92.github.io
Minimum R: ≥ 3.0
Bundled data: 77 KB / 7 files
Download size: 420 KB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MoBPS")

Format

Pook, T., Geibel, J., Hassanpour, A., & Niehoff, T. (2025). MoBPS: Modular Breeding Program Simulator (Version 1.13.1) [Computer software]. https://doi.org/10.32614/CRAN.package.MoBPS

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MoBPS version 1.13.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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